Trifolium pratense (red clover): 123918407
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Entry
123918407 CDS
T08949
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123918407
09122 Translation
03013 Nucleocytoplasmic transport
123918407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123918407
03041 Spliceosome [BR:
tpra03041
]
123918407
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
123918407
Spliceosome [BR:
tpra03041
]
Complex C
Other components
EJC/TREX
123918407
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123918407
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
Cytochrom_B562
FapA
Motif
Other DBs
NCBI-GeneID:
123918407
NCBI-ProteinID:
XP_045826402
LinkDB
All DBs
Position
LG3:3135320..3154076
Genome browser
AA seq
1850 aa
AA seq
DB search
MSVPPVQCVYVTEDCVREWRSGNPSFKVSQPVPMLRFLYELSWTMVRGELSFPKCKVALD
SVEFLDKVSAEKVASNFADIVSQMAQDLTLSGEFRSRLIKLARWLVESALVPVRLLQERC
EEEFLGEAEFIKIKAQELKGKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCRDSEAP
TQKGSASTIGIIKSLIGHFDLDPNRVFDIVLECFELQPDNDVFIELIPIFPKSHASQILG
FKFQYYQRMEVSNPVPYGLYRLAALLVKQDFIDLDCIYAHLLPKDEEAFEHYSTFSSKRF
DEANKIGKINLAATGKDLMDEEKTGDVTIDLFAAIAMETDAIDERKSELHTSQTLGLLTG
FLSVDDWYHAHVLFERLSPLNPVEHIQICDSLFRLIEKSISSPYYVIRQAHLQNPGLSAG
GSTDAMNVDHPSGHGSFIDLPKELFQMLACTGPFLYRDTMLLQKVCRVLRGYYLSALDLV
SHGDSALNPQFHVIGNPHLHLKEARLRVEDALGACLLPSLQLVPANPAVGQEIWELMSLL
PYEARYHLYGEWEKDDDRYPMLLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANP
MTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLALGGRDKLKDDGLNLS
DWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKRGQGIELVLLQELIQQMANVQYTENL
TEEQLDAMAGSETLKYQATSFGMTRNNKALIKSTSRLRDALLPKDEPKLATPLLLLLAQH
RSLVLVNADAPYIKMVSEQFDRCHGTLLQYVDFLGSAVTPGSNYAILIPSLDDLVHLYHL
DPEVAFLIYRPVMRLFKSQRSPDVCWPLDDKNAASDSSTNFESDLADSSGSMVLDIGSNK
KQISWSYLLDTVKTMLPSKAWNSLSPDLYATFWGLTLYDLYVPKNRYESEIAKLHANLKS
LEELSDNSSSAITKRKKEKERIQESLDRLISELHKHEENVASVSRRLSHEKDRWLSSCPD
TLKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPYFNTVNHIDVLICKTLQPMI
CCCTEYEVGRLGRFLYETLKIAYHWKSDESIYERECGNKPGFAVYYRFPNSQRVTYGQFI
KVHWKWSQRITRLLIQCLESSEYMEIRNALIMLTKISSVFPVTRKSGINLEKRVAKIKSD
EREDLKVLATGVAAALAARKPSWVTEEEFGMGFLELKPAPSMTKSAAVQSGIGPHVSQTE
SASGKHMDSGNTVKDQTVRTKTADGRTESITAAKSDSGHVKLKGSSMLNGLDAQSSLPSP
AGQSGTLKSADTPKQVEESISRAPDEHVTRNVESRTSVKRSVATGSVLKPSKQDPLKEDG
RSGKTVTRTSGSSSNDKDLQTHASDGRHTGTNVSLSVSANGNSVSGSAKGLASSAKNAFD
GSGNESKAEVGATKSSMVKDDGNDIADFTRGSSSRVVHSPRHENTATSKSSDKIQKRAGS
VDELDRLGKRRKGDVDLRDLEGEVRFSEREKLMDLRLADDKVGPDELGLYRPGDKTLERP
KEKVNERYEREHRERLDRLDKSRGDDFVVEKPRDRSIERYGRERSVERMQERSFNRLPDK
AKDERSKDDRNKLRYNDAPIEKSHAEGRFHGQNLPPPPPLPPNMVPQSVGAGRRDEDADR
RYGATRHSQRLSPRHEEKEQRRSEEAVILQDDPKRRKEDDFRDRKREEIKVEEREREKAS
ILKEELLDLNAASKRRKLKREHLPTMEPGEYSPVAPAPPLPGIGMSQGYDGRDRKGPMIQ
HASYIDEPSLRIHGKEVASKLNRRESDPLYDREWDDEKRQRADQKRRHRK
NT seq
5553 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgccaccggtgcagtgtgtatacgtaacagaagactgtgttcgtgaatggagg
agtggaaacccttctttcaaggtctcccaacctgttccaatgcttcgctttctctacgag
ctctcgtggactatggttcggggtgaattgtcgtttccgaagtgtaaagtagcattagac
tctgttgaatttttggataaagtctcagctgagaaagtagcatcaaattttgcagatata
gtgagtcagatggctcaagatcttacattgtcaggagagttccgttctcgtctcattaaa
ctggcaagatggcttgtagaatcagcattggttccagtcaggttacttcaagaacgttgt
gaggaagaatttttgggggaggctgaatttattaaaattaaagctcaggagttgaaggga
aaagaggtcagagttaatacccgacttctttaccagcaaaccaaattcaaccttctcaga
gaagagagtgagggctatgccaaactggtcactctactttgtcgggactctgaagctccg
actcaaaaaggatctgcatcaacaattggcattattaagtcattgattggccattttgat
ttggatccaaaccgtgtttttgatattgtacttgagtgttttgaacttcagcccgataat
gatgtgttcatagagctgattcctatttttcccaagtctcatgcttcacagattcttgga
tttaaatttcaatattatcagcgcatggaagtcagtaatcctgtaccatatgggctttat
agacttgcagccttgctggtgaagcaagattttattgatcttgattgcatatatgctcat
ttactccccaaggatgaagaagcatttgagcattatagcactttctcttccaagcgcttt
gatgaggctaataaaattggaaaaataaaccttgctgctactggaaaagatctaatggat
gaagagaaaacgggggatgtcactattgatctctttgctgctatagccatggaaactgat
gcaattgatgagcggaaatccgagcttcataccagtcaaactttgggcttgcttactggc
tttctttctgtggatgactggtatcatgcacatgtactatttgaacgcctctcaccactg
aatccggtggaacatatccaaatatgtgatagtttgtttaggcttattgagaagtcaatt
tcttcaccgtattatgttattcgccaagcacatcttcaaaaccctggattgtccgctgga
ggcagcactgatgctatgaacgtagatcacccttcaggacacggttctttcatagatctt
ccaaaggaactttttcagatgcttgcttgtactggaccttttctctaccgagatactatg
ttgttacagaaggtttgtagggtgttgagaggttattacctttctgctcttgatcttgta
agtcatggcgacagtgccttgaatcctcaatttcatgttattggaaatcctcacctacat
ttgaaggaagcaaggctaagggtggaggatgctttaggagcttgtctactaccttctcta
cagttggttcctgctaatccagctgttggccaggaaatttgggaactaatgagtcttctt
ccttatgaggcacgatatcatttatatggtgaatgggaaaaagatgatgatcgctatcct
atgctgttggctgctagacaaactgccaagttggacactagacgcattttgaaacggctg
gcaaaggaaaatttgaagcagctgggtcggatggttgccaaactagctcatgccaaccct
atgaccgtccttcgaacaatcgttcaccagattgaggcatacagagacatgattactcct
gtagtggacgcgtttaagtatttgactcagcttgaatatgatatattggaatacgttgtg
attgagcgattggcacttggtggacgtgataagttgaaggatgacgggcttaatttgtca
gactggcttcaatctctagcttcattttggggccacctatgtaaaaagtacccatcaatg
gaattgcggggcctgttccagtatcttgtgaaccagttaaaaaggggacaaggaattgag
cttgttctactgcaggagcttatccaacaaatggcaaatgttcagtacacagagaacttg
actgaggaacaactggatgctatggcagggagtgagactctgaaatatcaagcaacttct
tttgggatgactcgaaataataaggcattgataaagtcaactagcaggcttagagatgca
ttacttcctaaagatgaaccaaagttggcaaccccgctcttgcttcttcttgctcagcat
cgttctctagttctcgtcaatgcagatgcaccctacattaaaatggtcagtgaacaattt
gatagatgccatggaactcttcttcaatatgtggattttctaggcagtgcagtcacacca
gggtcaaattatgctattcttattccctcacttgatgacctggtccatctttaccacttg
gaccctgaggttgctttcttgatatatcgccctgttatgagacttttcaagtctcagagg
agtcccgatgtttgctggcccttggatgataaaaatgctgcaagtgattcatcaacgaac
tttgagtctgaccttgcagattcttctggtagtatggttctagatattggctccaacaaa
aagcagattagttggtcatatcttcttgatactgttaaaaccatgctgccttcaaaagca
tggaatagcctatctcctgatctttatgcaacattttggggtctcacattatatgatctg
tacgttccaaaaaaccgttatgagtcagagatagccaagttacatgctaatcttaaatca
ttggaggagctttctgacaattcaagctcagcaatcaccaagaggaagaaagagaaggaa
agaattcaagaatctctcgaccgtcttattagtgaactgcataaacatgaagaaaatgtt
gcatctgtcagcagacggctctctcatgaaaaagacagatggttaagttcctgtcctgat
accttgaagattaacatggagtttcttcagcgttgcatatttccacgctgtactttcagt
atgccagacgcagtttattgtgctatgtttgtccacacacttcattcccttggaacaccc
tattttaacacagtcaaccacatagatgttcttatttgtaagactcttcaaccaatgata
tgctgctgcactgaatatgaggttggtaggcttggcaggtttctctatgagactttgaag
attgcttaccattggaagagtgatgaatctatttatgaacgtgaatgtggaaacaagccg
ggatttgctgtttattatagatttccaaatagccagcgagttacatacggacagttcatt
aaggtacactggaaatggagtcaaagaatcacaaggttactaattcagtgtctggaatct
agcgagtacatggagattagaaatgctcttataatgttgactaaaatttctagtgttttc
cctgttacacggaagagtgggataaaccttgaaaagcgggtagctaagattaaaagtgat
gaaagagaggatcttaaggttttggcaactggtgtagcagcagcactggctgctaggaag
ccttcttgggttaccgaagaagaatttggtatgggatttcttgaattgaagcctgcacca
tctatgaccaaatctgcagctgtacaaagtgggataggtcctcatgtttctcaaactgaa
tctgccagtgggaaacatatggattctggaaacacagtcaaagaccagacagtaagaact
aaaactgcagatggcagaacggaaagcattacagcagcaaaatctgattctggccacgta
aaactcaagggtagctcaatgctgaatggattggatgctcaatcatctctaccctcacct
gctggacaatctgggacattaaaatctgcggatactcccaagcaagtggaagaatccata
agtagggcaccagatgaacacgttacaagaaatgttgagtctagaacctctgtgaaacgt
tcggtggctacagggtcagttttgaagccttcaaaacaagatcctttgaaagaagatggt
agatctggaaaaactgttactagaacttctggttcctcaagcaatgacaaggatcttcag
acccatgcatcagatggaagacacactggaacaaacgtctcattatcagtcagtgctaat
ggtaacagtgtctcaggttctgcaaaaggcttggcttcatcggcaaaaaatgcatttgat
ggttctggtaacgaatcaaaggcagaggttggagctaccaaatcatctatggtgaaggat
gatggaaatgatattgctgacttcacaagaggatcctcttctcgtgtagttcattcccct
aggcatgaaaacacagctacctcaaagtctagtgataaaattcagaagcgtgctggttct
gttgatgaactagacagactaggtaaacggcggaaaggggatgtagatctaagagattta
gagggtgaagttcgattctctgaaagagagaagctgatggatctgcgattggctgatgac
aaagtgggaccagatgaacttggtttgtacagaccaggtgataagacgttggaaaggcca
aaagaaaaagtaaatgaacgatatgaaagggaacacagggaaagattggaccgtctggac
aagtctcgtggtgatgactttgttgtagaaaaacctagggacaggtcgatagaaagatat
ggaagagaacgatctgttgagagaatgcaagagaggagtttcaatagactccctgacaag
gctaaggatgaaagaagtaaggatgatagaaataaattacgatacaatgatgcaccgata
gaaaaatctcacgctgagggccgcttccatggacaaaacttgcctccaccacccccttta
cctcctaatatggttcctcaatctgttggtgctggtaggcgtgatgaagatgctgatagg
aggtatggagctacaaggcattctcaaagactttctccaaggcacgaagaaaaagaacag
aggcggtctgaagaggctgttattttgcaggatgaccccaaacgtagaaaagaagatgat
tttcgagatcgtaagcgtgaagaaattaaggtggaagagagggaaagagagaaagcaagc
attctaaaagaagagttgttggatttaaatgctgcatccaagaggcgtaaacttaagagg
gagcatctaccaactatggagcccggggagtactcaccagttgctcctgcacctcctctc
cctggtattggtatgtcacaagggtatgatggaagagacagaaaagggccaatgatccag
catgccagttacatagatgaaccgagtcttaggattcatggtaaagaggtagccagcaag
ctgaatcgtcgtgaatcagatcccttatatgaccgagagtgggatgatgagaagagacaa
agagctgatcaaaagcgaaggcatcggaagtaa
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integrated database retrieval system
