Trifolium pratense (red clover): 123918602
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Entry
123918602 CDS
T08949
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123918602
03015 mRNA surveillance pathway
123918602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123918602
03041 Spliceosome [BR:
tpra03041
]
123918602
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123918602
Spliceosome [BR:
tpra03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
123918602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
123918602
NCBI-ProteinID:
XP_045826634
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All DBs
Position
LG3:19394186..19400421
Genome browser
AA seq
909 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKSQKFAPELEHLVDTTKVNMEVMKPWITRKVTELL
GFEDEVLINFIHGLLEAKIVNGKEVQIQITGFMEKNTVKFMKELWTLLLSAQKNASGVPQ
QFLDAKEEELLKKKAEHDRITSEIQRKKDKESKEIREERLKKLDGGLDAKDNDTASDPAL
KPRDSGNYIQDGKETDKRNGVKARNRVSRSPHSPAVSTSPHRGLPSRARANSKSFSNSRS
YSRSISRSPEARGRSVSSGRIQRSSRQQSISPRRRSPQRSPHRRPSYSRRRSRSASDSKS
PPIRRGVHSPFRRRRTPSPVKRRRSPSPVRRRRSPSPVRRRRSPSPVRRHRSPPSPIRRR
RSPPSPVRRRRSPYPVRRRRSPSPIRRRRSPSPMRRPKSPSSMHLRRSPSPVRQRRAPSP
MQQRSPSIRRRSPSPMRRIPPSRGRRSSSPMQSPTMRRYDSRTPRRRSPSPLRNRSPVSG
KKRSTSASPKRSPSRDEWSSQSPVRVSPSSARRISPRHQRSPVQSSMGRVRVQKKLSPEV
YQPSSPLQSVQRDKNGKASGYKSPDSMSTPDKSPIRSISPQARSRTSIKNRSPREIPLRQ
TRENLTKEGSLSPPKKPTNHKPSHGIPETSEGAEEAYYSRERRDPKSNSSEKKSRHPSPV
SKRIGSSAKFHHEDEFYPERAASHEDDNNKWSKKGQDIKCDKSSGKGGESPVQQKSPMNK
EFVSSEKPHDSYAAEIKKSDDKDQSISKYAKSSDQHKKSEAAQDLVEKADHVNQSASCDS
GSEESGKHRRDGKDRRKHKRSERKVDSSDENDSYDSELEDRKEAKRRKKEEKKKLRKEEK
HRKREERRRKREERHAEKLKMKSKTDYISDDEEVERRDDEEAPYDPKKLEIELRNKALES
LKAKKGMNN
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggtttctttcgtggtacgtctgctgatcaagacactcggttttcgaacaag
caagcgaagctgcttaaatcgcagaagtttgcaccggaattggagcatctggtggacaca
acgaaggtgaatatggaagtaatgaagccttggatcactagaaaagtgaccgagcttctt
gggtttgaagatgaagtgcttattaacttcatacacggtcttctggaagcgaagatagtg
aacgggaaggaagttcaaatacaaattactggattcatggaaaaaaacactgtcaagttc
atgaaagagctttggacacttcttctcagtgcacagaaaaatgccagtggtgttcctcag
cagttcttggatgctaaagaagaagaactcctgaaaaagaaggctgaacatgatagaata
acaagtgaaattcagaggaagaaagataaggaaagtaaagagattagggaggagaggctg
aagaaactggacggaggattagatgcgaaagataatgatactgcttcagacccagctttg
aagcccagggattcagggaactacattcaggatgggaaagaaactgacaagaggaatggt
gttaaagcaaggaacagggtttctaggtccccacattcacctgcagtttccacctcacct
catcgaggtttaccttcaagggcaagggcaaacagtaaatcattttcgaattcccgaagt
tattcaaggagtatatccagatctccagaggctcgaggacgttccgtttcttccggaagg
atacaacgttcttcacggcaacagtctatttctcctcgaaggcgctctccacaacgatct
cctcataggaggccttcttattcaaggagaagatcaagatctgcctcagactccaaatct
cctcctatacgacgtggagtgcattctccatttcgtcgacgcagaacaccctctcctgtt
aaaagacgtagatccccctctccagtgcgacgacgtagatcgccctctccagttcgacga
cgtagatcaccctctccagtacgacgacacagatcaccaccctctccaatacgacgacgc
agatcaccaccctctccagtacgacgccgcagatcaccttatcctgtgcgacgacgcaga
tctccctctcctatacgacgccgcagatcaccttctcctatgcgacgacccaaatcacct
tcttcaatgcacctacgtagatcaccgtcacctgttagacaaagaagggcaccctcaccc
atgcaacagagatctcctagcatccggcgtaggtcaccttcaccgatgcgccgaatacca
ccaagccgtgggcgtaggtcaagctctccaatgcaatctcccacaatgcgaaggtatgat
agtagaactccgcggcgcaggtctccctctcccttgcggaatagatcacctgtttctggc
aagaaaagatctacaagtgcctcccctaagaggtctccttctcgagatgaatggagttct
cagtctcctgtacgtgtatctccatcctcagccaggagaatttcaccaagacaccaaaga
agtcctgtgcagtcttctatgggaagagtcagggtgcaaaagaagttgtcgccggaagtt
tatcaaccctctagtcctttgcagtctgtacaaagagataaaaatggcaaagcttcaggc
tataaatctccagattcaatgtccacaccagataagtctccaattcgatcaatatcacca
caagcaagaagtaggaccagcattaaaaatagaagtccacgtgaaatccctctgaggcaa
acaagagagaacttgaccaaggaaggaagcttgagtccaccaaagaaaccaacaaaccat
aagcctagccatggcattccagagaccagtgaaggagctgaagaagcatattattctaga
gagcgcagagatcccaaatcaaattcatctgaaaagaaatcaagacacccctccccggtt
agtaagcgaataggttcatctgcaaaatttcatcacgaggatgagttttatcctgaaagg
gcagctagtcacgaggatgataacaataaatggagtaagaaaggccaggatataaaatgt
gataaatcttctggcaagggaggtgagtctcctgttcaacaaaagtcaccaatgaacaaa
gaatttgtttctagcgagaagcctcatgattcttatgcagcagaaataaaaaaatctgat
gacaaggatcaatccatttcaaaatatgccaaaagcagcgatcagcacaaaaaatcagaa
gctgctcaagatttagttgaaaaagctgatcacgtcaatcagagtgcttcttgtgattct
ggttctgaagaaagtggtaagcatagaagagatggaaaggataggagaaagcataaaagg
tcagagagaaaagttgactcatctgatgagaatgatagttatgattctgagttagaggac
cggaaagaggccaagaggaggaaaaaggaggagaagaagaagctgcgaaaggaggaaaaa
catcgaaagcgggaagagcggcggcggaaaagggaagaacggcatgctgaaaagctgaaa
atgaagagtaaaacagactatatttcagacgacgaggaagttgaacgaagggatgatgaa
gaggcaccatatgatccaaagaagcttgagatcgagctacggaataaggctcttgaatcc
cttaaagcaaagaagggcatgaataattaa
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