Trifolium pratense (red clover): 123918607
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Entry
123918607 CDS
T08949
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123918607
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123918607
03009 Ribosome biogenesis [BR:
tpra03009
]
123918607
04131 Membrane trafficking [BR:
tpra04131
]
123918607
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpra04147
]
123918607
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
123918607
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
123918607
Membrane trafficking [BR:
tpra04131
]
SNARE
SNARE associated proteins
Others
123918607
Autophagy
Aggrephagy
Other aggrephagy associated proteins
123918607
Exosome [BR:
tpra04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
123918607
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
CDC48_2
AAA_2
AAA_16
AAA_5
AAA_14
AAA_22
AAA_33
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
AAA_18
ATPase_2
nSTAND_NTPase5
Parvo_NS1
ABC_tran
Viral_helicase1
NB-ARC
Vps4_C
AAA_7
NACHT
AAA_lid_PRS2_C
TsaE
IstB_IS21
DUF815
Zeta_toxin
AAA_24
Molydop_binding
Zot
Motif
Other DBs
NCBI-GeneID:
123918607
NCBI-ProteinID:
XP_045826640
LinkDB
All DBs
Position
LG3:complement(19423391..19428016)
Genome browser
AA seq
807 aa
AA seq
DB search
MSQPESSDSKSVKKDFSTAILERKKSPNRLVVDEALNDDNSVVVMHPQTMEKLGLFRGDT
VLIKGKKRKDTICIALAEDTCEEPRIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGERVHI
LPIDDTIEGITGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETEPGEYCVV
APDTEIFCEGEPVKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKP
PKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNA
PSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPAL
RRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCTE
AALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFHTALGTSNPSALRETVVEVPNVSWE
DIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQA
NFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSIGDAGGAA
DRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDYDSRHSIF
KSCLRKSPIAKDVDLRALANYTQGFSGADITEICQRACKYAIREDIEKDIEQERKRKENH
EAMDEDFVDVEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAD
TRNRTTGSDSFATTTAAGGADEDDLYN
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaacctgaatcatccgactcgaaatcagtgaagaaggacttttccaccgcgatt
ctggaacgcaagaagtcgccaaaccggcttgttgtggatgaagcgcttaacgatgacaac
tctgttgttgtcatgcacccacaaaccatggaaaagttggggcttttcagaggtgacact
gttctcatcaagggaaagaaaaggaaggatactatttgtatagctcttgctgaggacacc
tgtgaggagcctaggattaggatgaacaaagtcgtgaggtcgaatttgagggttcgactt
ggagatgttgtgtctgtgcaccagtgtcctgatgtcaagtatggggaacgtgtacacatt
cttcctattgatgataccattgagggcatcactggcaatctctttgatgctttcttgaaa
ccctatttcttggaggcttatcgtcccgtcagaaagggagatctatttctagtgcgggga
gggatgagaagtgtagagtttaaggtcattgaaactgagcctggggagtactgtgtggtt
gctccagacactgagatcttttgcgagggggaacctgtgaaaagagaggatgaagatagg
cttgatgaagtcggttatgatgatgtgggtggtgttaggaagcaaatggcacaaattcgc
gagttggtcgagcttccactaaggcatccacaactttttaagtcaattggtgtgaaacca
cccaaaggaattttgctatatggacccccgggttctggaaagacattaatagcaagagct
gttgctaatgaaactggagctttcttcttttgtatcaatggaccagagatcatgtccaaa
ctggctggagagagtgaaagcaatcttaggaaagcatttgaggaagcagaaaaaaatgca
ccgtccatcatctttatcgatgaaattgattctattgcacccaagagggagaagacaaac
ggtgaagtcgaaagaaggattgtttcacaacttttgactcttatggatggattaaaatct
cgtgctcatgttattgttatgggtgccacgaatcgtccaaatagcattgacccagcattg
agaaggtttggtagatttgatagggaaatcgatattggtgttccagatgaaatcgggcga
cttgaagtccttcgcatacataccaaaaacatgaagctctctgatgatgttgatttggag
agaatttcaaaagatactcatgggtatgttggtgccgaccttgctgctctttgcactgaa
gctgctttgcaatgcatcagggagaagatggacgtcattgacttagaggatgagaccatt
gatgctgaaatactgaattccatggcagttacaaatgagcatttccatactgcacttgga
acaagcaacccatcagctttacgtgaaactgttgttgaggtgcctaatgtcagctgggag
gacatcggaggccttgagaatgtcaagcgtgaacttcaagagactgttcaatatcccgtt
gagcacccggaaaagtttgagaagtttgggatgtcaccatcaaaaggagttctcttctat
ggtcctccgggatgtggaaaaacgttgttagccaaagcaattgccaatgaatgtcaagct
aacttcatcagtgtgaaaggcccagaattgcttacaatgtggtttggtgaaagtgaagcc
aatgttagggaaatttttgacaaggctaggcaatcagctccatgtgtcctcttttttgat
gagcttgactccattgccactcagagagggagcagtattggtgatgctggtggtgctgct
gacagagttctaaatcaacttttgacagagatggatggcatgtctgccaaaaagaccgta
tttattattggagccactaacagacctgacatcattgattcagcacttctccggccaggc
cgtctagatcaattgatctatattcctcttccggattatgattcccgtcattcgatcttc
aagtcctgcttgaggaaatcaccgatcgcgaaagatgttgatttgagagcattggctaat
tatactcaaggttttagtggtgcggacattacagaaatatgccagcgagcatgcaaatat
gctataagagaagacatagagaaggacatagagcaagagaggaagaggaaggaaaaccat
gaggccatggatgaagactttgtcgacgttgaagttgcagagattaaagcggctcatttc
gaggagtcaatgaagtatgcacgtagaagtgtcagtgatgctgatatacgtaaataccag
gcatttgctcagaccttacaacaatcgaggggatttggaagcgaatttaggtttgcagat
accagaaataggactaccggatctgactctttcgcaacaactactgccgcgggtggggcc
gatgaagatgatctttataattag
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