Trifolium pratense (red clover): 123918729
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Entry
123918729 CDS
T08949
Name
(RefSeq) serine/threonine-protein kinase VPS15 isoform X1
KO
K08333
phosphoinositide-3-kinase, regulatory subunit 4 [EC:
2.7.11.1
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
123918729
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tpra01001
]
123918729
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123918729
Enzymes [BR:
tpra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
123918729
Protein kinases [BR:
tpra01001
]
Serine/threonine kinases: Other
VPS15 family
123918729
Membrane trafficking [BR:
tpra04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
123918729
Autophagy
Autophagosome formation proteins
PI3K complex
123918729
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS15-like_hel
Pkinase
WD40
WD40_Prp19
WD40_WDHD1_1st
WDR55
WD40_CDC20-Fz
HEAT
PK_Tyr_Ser-Thr
EIF3I
Beta-prop_EML_2
NBCH_WD40
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WDR90_beta-prop_4th
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_CAF1B_HIR1
APH
GCFC
Cohesin_HEAT
Vac14_Fab1_bd
HEAT_EZ
Beta-prop_HPS5
Tti2
Beta-prop_WDR75_1st
TCAD9
Motif
Other DBs
NCBI-GeneID:
123918729
NCBI-ProteinID:
XP_045826823
LinkDB
All DBs
Position
LG3:26373225..26382354
Genome browser
AA seq
1536 aa
AA seq
DB search
MGNKIARTTQVSASEYYLHELPSTYNLVLKEVLGRGRFFKSIQCKHDEGLVLVKVYFKRG
DFIDLSDYERRLSQIKDIFSTIDHPHVWPFQFWQETDKAAYLLRQYFFHNLHDRLSTRPF
LSLVEKKWLAFQLLLAVKQSHEKGVCHGDIKCENVLVTSSNWLFLADFASFKPTYIPYDD
PSDFSFFFDTGGRRLCYLAPERFYENGGEMQLAHDAPLKPSMDLFAVGCVIAELFLEGQP
LFELSQLLAYRRGQHDPSQHLEKIPDIGTRKMIQHMIQLEPESRFSAEIYLKEFAGVVFP
TYFSPFLHDFYRCWTPLNSDMRVLLCQSAFQEILKQMMNKQSSDDAGVTSGELLEEMVAK
ESVSFMKDSRRKREDMGKGLVHDQYELLGDINSLLRDSKNNNKNPSGNQQVTGNSQNSTF
PENLKSLQSPGELLQTISNAFRGNDHPFLRSITMNNLNSLMSEYDSQSDTFGTPFLPLPN
DSMRCEGMVLITSLLCSCIRNVKLPHLRRASVLLLKASALYIDDEDRLQRVIPYVIAMLS
DPAAIVRCAALETLCDILPIVRDFPPSDAKIFPEYIFPMLSMLPDDPEESVRICYASNIA
KLALTAYGFLIHSISLSEAGVLDELSLPQKPLTSSTQTSGRMKMINSDVQLLQLRKSIAE
VVQELVMGPKQTPNIRRALLQDIGKLCYFFGVRQSNDTLLPILPAFLNDRDEQLRTVFYE
KIVYVCLFVGQRSVEEYLLPYIEQALSDMTEAVIVRALECLAILCKSGFFRKRILLQMIE
RAFALLCYPSEWVRRSVVSFIAASSESLGAVDSYVFLAPVIRPFLRRQPVSLASEKALLS
CLKPPVSRQVFYEVLENSRSSDMLERQRKIWYSSSQSKIWEMDLLKKGIDELDSLKSWAD
KQHSPGLQHSPTLQQPGLTDCDKAESKLRDMGAFMHNDSNMAGNRDTQCLDKLQFSGFMS
PTFSGVNSLTYDKPSEGIPLYSFSVDRRGMGVPPAASDSPLQMNSLGVSSSAMPWVNPLS
KSFNLANSVPSPKLFSGSFSINNGSKQFHRVVHEPDPKENETAFATSTFQDVGLSSNIKG
TSISLEDATTQADISGFQSFARTSIPDSGWKPRGVLVAHLQEHRSAVSDIAVSSDNSFFV
SASDDSTVKIWDSRKLEKDISFRSKLTYHLEGSHALCVAMLPGSAQVIVGASDGFIHTFS
VDHISRGLGNVVEKYSGIADITKKDTKEGAILGLLNSPVDNNSIMYSTQNCGIHLWDTRS
NSNSWTLKATPEEGYALSLASGPCSNWFVSGSSRGVITLWDLRFLVPVNSWKYSIACPIE
KICLFLPPPNTSLSSTTRPLVYVAAGCNEVSLWNAENASCHQVLRTANYDTDAEMSDLPW
ALAKSSSKATSQSDPRRNVNRKYRVDELNEPPPRLPGIRTLLPLPGGDLLTGGTDLKIRR
WDHYSPDRSYCICGPNLKGVGIDDFYETKSSFGVQVVQETKRRPLATKLTPKAILAAAAT
DSAGCHRDSIVSVASVKLNQRLLLSSGRDGAIKVWK
NT seq
4611 nt
NT seq
+upstream
nt +downstream
nt
atgggaaacaaaatagcgcgaacgacgcaagtttcagcatcggagtattacctacacgag
ttaccatcaacgtacaatttagttctgaaagaagttcttggacgcggtcgtttcttcaaa
tcgattcagtgtaaacacgatgaaggtttggttctcgttaaggtttatttcaaacgcggt
gatttcatcgatctttccgattatgaacgccgattatctcagattaaagatattttcagc
actattgatcatcctcatgtttggccttttcagttttggcaagaaacagataaagcagct
taccttttgaggcaatatttcttccataatttgcatgatcgcttaagcactcgacctttt
cttagtttagttgagaagaaatggttggcttttcagttgcttttagctgtaaaacagagc
cacgagaagggagtgtgtcatggtgatatcaagtgtgaaaatgtgctagttacgtcctca
aattggctttttcttgctgactttgcatctttcaaacccacatacattccgtatgatgac
ccatctgatttctcttttttctttgacacgggtggaagaagactctgttatctggcgcct
gagagattttatgaaaatggaggggagatgcagttggcacatgatgcacccctaaagcca
tctatggatttatttgctgtcgggtgtgtaattgctgaacttttcctcgaaggccaacca
ctatttgaactgtctcaacttcttgcgtatcgcagagggcaacatgatccaagtcaacat
cttgaaaaaataccagatattggaacccgcaagatgattcaacacatgattcagttggaa
ccagagtctcgattttctgctgaaatatatttgaaggaatttgctggagttgtattccct
acctatttttcaccatttctgcatgatttttaccgttgctggactcctctcaattctgat
atgagggttttactatgccagagtgctttccaggagatacttaaacaaatgatgaacaag
cagtcatctgatgatgcaggtgttacttctggagagcttttagaagagatggttgccaaa
gaaagcgtgagtttcatgaaggactcacgaaggaaacgagaggacatgggaaaaggatta
gttcatgatcagtatgaacttcttggtgatattaatagcctactgagggattctaaaaat
aataataagaatccatcaggtaatcagcaagtaacaggaaattcacaaaattctaccttt
cctgaaaatctgaaaagtttgcagtctcctggtgagctgcttcaaactatctcgaatgca
tttcgaggaaatgatcatccctttttgagaagtattactatgaacaacttaaattcattg
atgtccgagtatgatagtcagtctgatacatttggaacaccatttctaccgttaccaaat
gatagtatgagatgtgaagggatggttttgataacttctttgttgtgctcatgcatacgc
aatgtcaagttgcctcacctaaggagggcatctgtactcttgttgaaggcttctgcccta
tatattgacgatgaggatcggttgcagcgtgttatcccatatgtaattgcaatgctttct
gatcctgcagcaattgtgcgttgtgctgctttggaaactttgtgtgacattcttcccata
gtgcgggattttcctcctagtgatgcaaagatatttcccgagtatatttttcctatgctt
tctatgcttcccgatgatcccgaggaaagtgtgaggatatgctatgccagcaatatagct
aagctggcacttactgcttatggatttttgatacactcaataagcttgagtgaggcaggt
gtccttgatgaactgagtttgccacagaaaccattgacatcatccactcagacctctggg
agaatgaagatgataaatagtgatgtccagcttctgcagctgaggaaatcaattgcagag
gttgttcaggaacttgttatgggtccaaagcaaacaccaaatattaggagagcacttctt
caggatattggtaaactttgctacttctttggtgtgagacagagtaatgacactctctta
cctatccttcctgccttcttaaatgatcgagatgagcaattaaggacggtattctacgaa
aagattgtttacgtctgtctttttgtgggccaaagaagtgtagaggaatatctattacct
tacattgagcaagctttaagtgatatgacagaagctgtcattgttagagccttagaatgt
ttggctattctatgcaaaagtgggttcttccggaagaggatattgcttcaaatgatagag
cgtgcctttgctttattgtgttatcccagtgaatgggtacgaagatcggttgtctctttc
attgctgctagcagtgagagcctgggtgcagtggattcttatgtttttcttgctcctgtt
atacgtcctttccttcgcagacaacctgtgtctcttgcttcagagaaagctcttttgtca
tgtttaaaacctcctgtctcaagacaggttttctatgaagttttggagaactccaggagt
tcggacatgctagaaagacagagaaagatatggtatagttcatcacagtctaaaatatgg
gaaatggatttactgaaaaaaggaatcgatgagttggactcattaaagagctgggctgac
aagcaacacagtcctgggcttcaacatagtcctaccctccaacagccaggactaactgat
tgtgacaaagctgagtcaaaattaagagatatgggggcctttatgcataatgatagcaat
atggcaggaaatcgtgatacacagtgcttggacaagttacagttttcgggatttatgtca
ccaacctttagtggtgtaaacagtttaacatatgacaagccatcagaaggcataccttta
tactccttcagtgtggacaggagaggaatgggagtacctcctgcagcatctgattctcca
ttacaaatgaattctctgggtgttagttcatctgcaatgccttgggttaatccacttagt
aagtcctttaatttggccaattcagttccatcaccaaagctcttttcaggttcttttagc
atcaacaatggttctaaacagttccaccgagtggtacacgaaccagatcctaaggaaaat
gagacagcctttgccactagcacatttcaagatgtgggactatcttctaatattaaaggt
acatcaatttcactagaagatgctactacccaagctgatatatcaggatttcaatctttt
gctcgaacatccatccctgattctggttggaagccgcgtggggtgttggttgcacacctc
caggagcaccgttcagcagttagtgacatagcagtttcttctgacaacagcttttttgtg
agtgcatcagatgactctacagtcaagatttgggattccagaaagctagaaaaagacatt
tcattcaggtcaaagctaacttatcacctggagggaagccatgcgttatgtgtggcaatg
cttccaggttcagctcaagtaatagttggagcatctgatggatttattcatacgttttct
gttgatcatatctctagaggtctaggaaatgttgttgagaagtattctggtattgctgat
atcacaaagaaggacaccaaagaaggtgccatacttggcctattaaatagccctgtggat
aataatagcattatgtatagcacccagaactgtggcatccatctatgggatacgaggtca
aattccaattcttggacactgaaagctactcccgaggagggctacgccttgtccctagca
tcagggccttgttccaactggtttgtatcagggtcttccaggggtgtaattacactttgg
gatctgagatttcttgtacccgtaaactcttggaagtattctattgcatgtcctatagaa
aaaatttgtctcttccttcctcctccaaatacttctctgtcttcaaccactaggcccctt
gtttatgtggctgcgggttgcaatgaagtttctctttggaatgcagagaatgctagctgc
caccaggtattgaggacggccaattatgacactgatgcagaaatgtccgatctgccttgg
gccttggccaaatcttcaagtaaggcgacttctcagtcagatccaagacgaaatgttaat
cgcaagtatagagtcgatgagctaaatgagcctccgcctcgtcttcccggtattcgcaca
ttacttcccttaccagggggtgatttattgactggtggcactgatttaaagatacgtcga
tgggatcattacagtcctgacagaagctactgcatctgtggaccaaacctaaaaggagtt
ggaattgatgatttttatgaaacaaaatctagttttggagtgcaagttgtacaggagaca
aaaagacgtcctcttgcaaccaagctgacaccaaaggcaattcttgcagctgctgccact
gattctgccggttgccatcgtgattctattgtttctgtggcttcggttaagttaaaccag
agacttctactttctagtggtagagatggggccatcaaggtttggaagtaa
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integrated database retrieval system
