Trifolium pratense (red clover): 123918749
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Entry
123918749 CDS
T08949
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123918749
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123918749
03012 Translation factors [BR:
tpra03012
]
123918749
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123918749
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
123918749
Translation factors [BR:
tpra03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
123918749
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
dsrm
DEAD
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_19
ATPase
AAA_16
AAA_23
Dicer_dimer
ABC_tran
Myosin_head
Motif
Other DBs
NCBI-GeneID:
123918749
NCBI-ProteinID:
XP_045826849
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All DBs
Position
LG3:13422201..13436403
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AA seq
1190 aa
AA seq
DB search
MPPPVMRIRMPMPTVLPPYSAGIFSRIATHRHFLTSTSLTSPPPTTTIRRLPSSFPAAFY
HRYGGAPLRHRTFALPLFYQQTSTYGRFAFHDVSSDDDSDLQFANSSHSQPRSQKELGDS
TLENIDSWRWKLTMLLRNKGEQEVVSNEKKDRRDFLQLETLATRMGLYSRQYARVVVFSK
VPLPNYRPDLDDKRPLREVTLPFGVHREVDTHLLAHFSNMAIKRVGSLDDSLHNGSIPAD
EGIYGHPEPMIHNSVAKEKILQRRSLQLRQQQQDWKESSEGKKMLEFRRSLPAFKEKDAF
LKVVSENQVIVISGETGCGKTTQLPQYILESEIEAGRGALCNIICTQPRRISAISVSERV
AAEHGEKLGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRSLKGVTHVIVDEIHER
GMNEDFLLIVLKDLLPRRPDLRLILMSATLNAELFSSYFDGAPTMHIPGFTFPVRAQFLE
DILERTGYRLTPYNQIDDYGQEKSWKMQKQAQSFKKRKSQIASAVEDALEVADYKGYSLR
TKESMSCWNPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDIHSLKDHLHAHPLLGDQ
SRVLLLACHGSMSSTEQKLIFENPEGGVRKIVLATNMAETSITINDVVFVVDCGKAKETS
YDALNNTPCLLPSWISKAAARQRKGRAGRVQSGECYHLYPKCVYDAFDDYQLPELLRTPL
QSLCLQIKSLQLGSISEFLSSALQPPEPLSVQNAVDYLKIIGALDENENLTVLGRKLSML
PVEPKLGKMLILGAIFNCLDPILTVVAGLSVRDPFVVPADKKDLAESAKGHFAAGAYSDH
LALVRAYDGWKDAEAQQAGYEYCWRNFLSSQTLRAIDSLRKQFFNLLKDIGLVSNNSETN
NKWSNEEHLLRAVICAGLFPGISSVVNKEKSIALKTMEDGPVLLYASSVNGSVPKIPYPW
LVFNEKIKVNSVFLRDSTAISDSMLLLFGGNISKGGLDGHLKMLGGYLEFFMKPELAKTY
STLKRELEELIQKKLLDPMFDIQSHTQLLSAVRLLVSEDHCHGRFVFSHQDLPQLKKATK
SNSGDGGGGDNSKNQLQTFLTRAGHQAPTYKTQQLRNNQFRSTVIFNGMDFVGKPCGSKK
LAEKSAAAEAILWLKGDNTHSSGDIDHASVLLKKRNKKSRKKSLSDAKWS
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgccaccgccggtgatgcgaattcgaatgccgatgcccaccgtattaccaccatactcc
gccggcatcttctccagaatcgccactcatcgtcatttcctcacttccacatccctaaca
tcaccaccaccaacaaccacaatccgtcgccttccatcctcctttcccgccgccttctac
cacagatacggtggtgctcctctcagacataggacctttgctcttccgcttttttaccaa
caaacttccacttatggtcgttttgccttccacgacgtttccagtgatgatgattccgac
cttcaattcgctaattcttctcactctcaacctcgctcccaaaaagaattgggcgattcg
actctcgaaaacattgattcttggagatggaaactcaccatgcttcttcgcaataaaggc
gagcaagaagttgtgtccaatgagaaaaaggaccgtcgtgattttctgcaacttgaaact
ttagctaccaggatgggtttatatagtcgacagtatgcaagagttgttgtctttagcaag
gtgcctttgccaaattaccgccctgatctcgatgataagcgtccactcagagaggtaacc
ttaccctttggtgttcatagagaagtagacactcatctccttgctcatttttcaaatatg
gctataaaaagagtaggctctttggatgattccttgcataatggaagcattcctgctgat
gaagggatttatgggcatccggagcccatgatccataatagtgttgccaaagagaaaatc
cttcaaagaagaagtttgcaactgcgtcagcaacaacaagactggaaggaatcttccgaa
gggaaaaagatgcttgaatttcgccgaagtcttcctgcattcaaagagaaagatgcattt
ttgaaagtcgtttcagagaatcaggtcattgttatctcgggtgaaactggttgcggtaag
accacacaacttcctcaatacatattagaatctgagattgaagctggacgtggagctcta
tgtaacataatttgtactcagcctagaagaatatctgctatatctgtttctgaaagggtt
gcagcagaacatggggaaaaattgggagaatccgttggttataaagttcggttggagggt
atgagagggagggatactcgtcttcttttttgcaccacgggtgtgttattgcggagacta
cttgtggatagaagtttaaaaggtgtaactcatgttattgttgatgaaattcatgaacgt
ggaatgaatgaagattttcttctcattgtcctaaaggatcttctccctcgtcgtcctgat
ttgagattaattttgatgagtgcaaccttaaatgctgaacttttttcttcgtattttgat
ggtgccccaactatgcatatccctggatttacatttccagttcgagcacaatttcttgag
gatattctggaaaggactggatatcggttgactccttataatcaaattgatgactatggt
caagaaaaatcatggaaaatgcagaaacaagctcaatctttcaaaaaaagaaagagccag
attgcttctgctgttgaggatgcattagaggttgcagactacaaggggtatagcctacgc
actaaggaatcaatgtcctgctggaaccctgactcaattggtttcaaccttattgaacat
gtgctttgccacattgttaagaatgaaaggccaggtgctgttttggtttttatgactggt
tgggatgatatacactctttgaaggatcacctccatgctcatcctttgttgggcgatcag
agccgagtattacttcttgcatgccatggctctatgtccagcacagagcagaaattaata
tttgaaaatcctgaaggaggggtgaggaaaattgttctggctactaatatggccgagact
agtattaccatcaacgacgttgtctttgtggttgattgtggaaaagcaaaagagacatca
tatgatgcattaaataacactccttgtttgcttccatcttggatctcaaaagctgctgcc
cgtcagagaaaaggcagggctggtcgtgttcaatctggcgaatgctatcatctttatccc
aaatgtgtttatgatgcttttgatgattatcagttaccagagcttttaagaacaccttta
cagtccttatgtctacaaataaaaagtctacaacttggaagcatctctgagtttttatct
agtgctctccagccaccagagcctctatcggttcaaaatgctgttgactatttgaagatt
atcggtgccttagatgagaatgaaaatttgacagttctagggcgcaagttgtcaatgctc
cccgtagaacctaagcttggcaagatgctcatcttgggagctattttcaactgtttggat
cccatattgactgttgttgctgggcttagtgtgagagacccatttgttgtgccggctgac
aagaaggatcttgcagagtctgccaagggccactttgctgctggtgcatacagtgatcat
cttgcacttgtccgggcttatgatggttggaaagatgctgaagcacagcaagctggttac
gagtactgttggcgtaattttctttcttctcagacacttagggccattgactctcttcga
aagcaattctttaacttgctcaaagatattggtctggttagcaacaattctgaaaccaac
aataaatggagtaatgaggagcatctgctccgagcagttatctgtgcgggtttgtttccc
ggaatatcctctgttgtgaacaaggaaaagtcaatagcactgaaaacaatggaggatggt
ccggttcttctgtatgctagctctgtaaatggaagtgtacccaaaattccatacccatgg
ttagtgtttaatgaaaagattaaagtgaattcagtattccttagggattcaactgccata
tctgactccatgctgctcttatttggtgggaacatatccaaaggtggactagatggtcac
ctaaaaatgttgggagggtatctggaatttttcatgaaaccagaattagccaagacttac
tcaactttaaagagggaactggaggaattgatacagaaaaaacttctggatcctatgttc
gatatacaatcgcatactcagcttctttcagctgtaagattgttggtatcagaagaccac
tgtcatggcagatttgtctttagtcaccaggacctaccacagttgaagaaagcaacgaaa
tccaacagtggtgatggaggtgggggtgataattctaaaaatcagcttcaaacattcctt
accagggctggacatcaggcaccaacttacaaaacacagcagctgagaaacaaccaattc
cgttctactgttatattcaacggcatggattttgttgggaagccatgcggcagcaagaaa
ctagcagaaaaatctgctgctgctgaggctattctatggttaaaaggggataatacccat
tcatctggtgatattgatcatgcatctgtgcttttgaagaaaagaaacaagaaaagtaga
aaaaaatcgcttagtgatgctaaatggagttga
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