KEGG   Trifolium pratense (red clover): 123918759
Entry
123918759         CDS       T08949                                 
Name
(RefSeq) WD-40 repeat-containing protein MSI1
  KO
K10752  histone-binding protein RBBP4
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03082  ATP-dependent chromatin remodeling
tpra03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    123918759
   03083 Polycomb repressive complex
    123918759
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tpra03036]
    123918759
Chromosome and associated proteins [BR:tpra03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     123918759
  Histone modification proteins
   HAT complexes
    HATB complex
     123918759
   HDAC complexes
    Sin3A-HDAC complex
     123918759
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     123918759
    PRC2.2
     123918759
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     123918759
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    123918759
  Chromatin remodeling factors
   NuRD complex
    123918759
   NuRF complex
    123918759
   NuRF complex (fruit fly)
    123918759
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz WD40_Prp19 Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_RIG_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR75_1st WD40_RFWD3 Beta-prop_EML EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C ANAPC4_WD40 WD40_MABP1-WDR62_2nd eIF2A MIOS_WD40 NBCH_WD40 Beta-prop_SPT8 Beta-prop_RIG_1st WD40_MABP1-WDR62_1st Beta-prop_NUP159_NUP214
Other DBs
NCBI-GeneID: 123918759
NCBI-ProteinID: XP_045826863
LinkDB
Position
LG3:13446341..13450131
AA seq 423 aa
MGKEDEEMRGEIEERLINEEYKIWKKNSPFLYDLVITHALEWPSLTVEWLPDRQEPAGKD
YSVQKLILGTHTSENEPNYLMLAQVQLPLDDSENDARHYEDDRPEVGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNPFVIATKTISAEVYVFDYSKHPSKPPLDGSCNPDLRLRGHNTE
GYGLSWSTFKQGHLLSGSDDAQICLWDINGTPKNRSLDAMQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQYLLIWDLRTPSVTKPVQSCIAHSSEVNCLAFNPFNEWIVATGSTDKTVKL
WDLRKITNPLHTFDCHKEEVFQVGWNPKNETVLASCCLGRRLMVWDLSRIDEEQSPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVVASVAEDNILQIWQMAENIYHDEDDMPEQSA
KAP
NT seq 1272 nt   +upstreamnt  +downstreamnt
atggggaaagaagacgaagaaatgagaggtgaaattgaagaacgtttaatcaacgaagaa
tacaaaatctggaaaaagaacagtccttttctctacgatctggtcatcactcacgctctg
gaatggccatctctgaccgtcgaatggcttcccgaccgtcaagaaccagccggaaaagat
tactctgttcaaaaactgatcctcggtactcacacttccgaaaacgaacccaattatctc
atgttagctcaagttcaacttcctctcgacgattccgaaaacgatgctcgtcattatgaa
gatgatcgtcctgaagttggtggttttggttgtgctaatggtaaagttcagattattcaa
cagattaatcatgatggtgaagttaatagggctcgttatatgcctcagaatccttttgtt
attgctactaaaactattagtgctgaggtttatgtttttgattatagtaaacatccttct
aaacctcctcttgatggttcttgtaaccctgatttgagattaagaggtcataatactgaa
ggttatggtttgtcttggagtacttttaaacaaggtcatttgcttagtggctctgatgat
gctcagatttgtttgtgggatattaatggtactcccaaaaatcgatctttagatgctatg
cagatctttaaggtacatgaaggtgttgttgaagatgtggcttggcatttgaggcatgag
tatttgtttggttctgttggtgatgatcagtatttgcttatatgggatcttcgaacaccg
tctgttactaagcctgttcagtcttgtattgctcattcaagcgaggttaactgcttggct
ttcaaccccttcaatgaatggatagttgctactggttctactgataaaacagtgaaattg
tgggatctgcgcaagatcaccaatcctctccacacctttgactgtcacaaggaggaggtt
ttccaggttggctggaatccaaagaatgagaccgtcttggcttcttgttgtcttggtagg
agactcatggtgtgggatcttagcaggattgatgaagagcagtcgccggaggatgctgaa
gatggtccgccagaattgctctttattcatggcggtcatacgagcaaaatatctgacttc
tcttggaacccatgtgaagattgggttgttgctagtgtggctgaagacaacatacttcaa
atatggcagatggcagagaacatttaccatgacgaagatgatatgccagaacagtcagcg
aaggccccttaa

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