Trifolium pratense (red clover): 123918952
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Entry
123918952 CDS
T08949
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123918952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123918952
03036 Chromosome and associated proteins [BR:
tpra03036
]
123918952
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
123918952
Coactivators
SAGA/TFTC/STAGA complex
123918952
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
123918952
STAGA complex
123918952
TFTC complex
123918952
SAGA complex
123918952
SLIK complex
123918952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
TFIID-31kDa
CBFD_NFYB_HMF
CCDC47
Histone
Motif
Other DBs
NCBI-GeneID:
123918952
NCBI-ProteinID:
XP_045827112
LinkDB
All DBs
Position
LG3:complement(45460713..45466020)
Genome browser
AA seq
510 aa
AA seq
DB search
MSVIPKETIEVIAQTIGITNLSSDVALALAPDLEYRIREIMQESIKCMRHGMRTFLTADD
VDAALALRNLEPIYGFASNDPPRFKRAPGHKDLFYIDDKDVDIKDLVEAPLPKAPLDTSI
TSHWLAIEGVQPAIPENAPFEASSEIRQIEYKDDALPVDVKLPVKHIITTELQLYYEKII
ELILNKPGSIPFRRALVTLATDSGLHPLVPYFTRFVADEVARNLNNLNILSALMRLVRSL
LRNPHIHIELYLHQLMPPIITCIVAKRIGNRLSDNHWELRDFSANLVALICKRFGHMYHN
LQPRVTKTFLHSFLDPTKALPQHYGAIKGITALGSRLVRLLILPNLEPYMHLLEPEMQLE
KQKNEIKRQEAWQVYGALLCAVGQNMHEKVKRFSSLLPPPTRATSIGNGKAMVAMPGVTG
TMVPMNSMSVDNMQGSTSGYSPMMGVSNSNAGMSSTMGRQLSKEYNTSSSILAQAWKDDI
DAGQLLPPVFELFGESLLSFIPKPESYVFL
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgattccaaaagaaacaattgaagttattgcacaaaccattggcatcactaat
ttatcttccgatgttgcccttgctcttgcacccgatcttgaatatcgcattcgtgaaata
atgcaggaatcgattaaatgtatgcgtcatggaatgagaacttttcttactgctgatgat
gttgatgctgcacttgcattgagaaatttagagccgatatatggttttgcctctaatgat
cctccgcggttcaaaagagctcctgggcacaaggatttgttctacattgatgacaaggat
gtggatattaaagatctggtggaagctcctttaccaaaagcaccccttgatacatcaatt
accagtcattggttggctattgaaggtgtgcagcctgcaattcctgaaaatgctccattt
gaagcttcctctgagataagacaaattgaatataaggatgatgcgcttcctgttgatgtc
aaattaccagttaaacatataataacgacggagcttcagctttactatgaaaaaataatt
gagctgattttgaataagcctggctccattccttttagaagagcattggttaccttggca
actgactcaggactccatcctttagttccttattttacacgctttgttgctgatgaggtg
gcaaggaatttaaataatttaaatattttatctgccttgatgcgccttgtgcggagcctt
ttgcgaaatcctcacatacatatagaactttatttacaccaattgatgccgcctatcatt
acttgcattgttgcaaaaaggattggaaacagactgtctgataatcactgggagcttagg
gactttagtgctaatcttgtggctttgatatgcaaaagatttgggcatatgtatcacaat
cttcagccgcgtgtgacaaagacatttcttcattctttcttggatcctacaaaagctcta
cctcaacactatggtgcaattaaaggaataacagctcttggatcaagactggttcgcttg
cttatacttccaaatctcgagccatatatgcatcttcttgagccagaaatgcaacttgag
aagcaaaaaaatgaaataaaaaggcaagaagcatggcaagtctacggagccttgctgtgt
gcagtaggccaaaatatgcatgaaaaggtcaaaagattcagcagtttgcttccccctcca
actcgtgctacttcaattggcaatggaaaagccatggttgcaatgccaggtgttactggg
actatggtaccaatgaattccatgtcagttgacaacatgcaagggtcaacaagtggatat
tcccccatgatgggagtttctaattcaaacgccggcatgtcatcaacaatgggtcgtcaa
ctatccaaagaatacaacacttcctcttccattctagctcaggcttggaaggatgacata
gatgcaggacaattgctgccaccagtgtttgaattatttggcgagagtctgttatcattt
ataccaaaacctgaatcatatgtatttttgtaa
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