Trifolium pratense (red clover): 123918986
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Entry
123918986 CDS
T08949
Name
(RefSeq) heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic isoform X1
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00900
Terpenoid backbone biosynthesis
tpra01100
Metabolic pathways
tpra01110
Biosynthesis of secondary metabolites
Module
tpra_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
123918986
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
tpra01006
]
123918986
Enzymes [BR:
tpra01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
123918986
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
123918986
2.5.1.29 geranylgeranyl diphosphate synthase
123918986
Prenyltransferases [BR:
tpra01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
123918986
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
123918986
NCBI-ProteinID:
XP_045827155
LinkDB
All DBs
Position
LG3:complement(12479218..12481942)
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AA seq
377 aa
AA seq
DB search
MPYSVQSHAISHYHLITTTPFSYRSGIKYFFLKLKMAPFTISTLPSLRIGHFRKPPNCIL
PIHCSTAAPSPSSVSIRSKAVHFDLKTYWTSLMVQINEKLDEAIPVQFPQQIYEGMRYSA
LAKGAKRSPPVMCISACELFGGSRLAAFPTACALEMVHAASLIHDDLPCMDDSLSRRGQP
SNHAVYGVDMAILAGDALFPLGFQHIVSHTPSDLVPESRLLRVIAEIARCVGSTGMAAGQ
FLDLEGGPNAVGLIQDKKFGEMAECSAVCGGLLAGAEDDEIERLRRYGRAVGVLYAIVDD
ILDARLKPEGDNERKNRGKSYVGVYGIEKAAEVAEELRAKALEELDGFEKYGDQVLPLYS
FVNYAIDRSFNVDEASG
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgccttactcagtgcaatcacacgccatttcacactaccaccttatcacaactacgcca
ttttcatatcgttctggaatcaagtattttttcttaaagttaaagatggctccttttaca
atttcaacattgccctctttacgcatcggccatttcagaaagcctcctaattgtatcctt
ccaattcactgctccacggctgctccttctccttcatcagtttccattcgatcaaaagct
gttcactttgatttgaagacatattggacttccctgatggtccagatcaatgagaagctc
gatgaagctattccggttcagttccctcaacagatatatgagggtatgaggtattctgcc
cttgccaaaggtgccaagcgatccccccctgttatgtgtatatctgcttgtgaactcttt
gggggcagccgccttgctgcctttcccactgcctgtgctcttgaaatggttcatgccgct
tcattgatacatgatgatcttccctgtatggacgactcattgtcccgtcgtggccagcct
tcaaatcacgccgtctatggtgttgacatggcaatcctggcgggagatgcactctttccc
cttggatttcaacacattgtttcacatactccctctgaccttgtacctgagtcccgtcta
cttcgtgtgattgctgaaatagcccgctgtgtgggctccactggaatggcagcagggcaa
ttcttggaccttgaagggggcccaaatgcagttggattgatacaagataaaaagtttggt
gaaatggcggagtgttctgcagtgtgtggaggattgttggccggtgccgaagatgatgag
atagagagactaagaaggtatggtagagctgttggagtattgtatgcgattgtagatgat
attttggacgcgagattgaaacctgagggagataacgaaaggaaaaacagagggaagagt
tacgtaggagtttatgggattgaaaaggcagctgaggtggctgaagaacttagagcaaag
gctttggaggagttggatggatttgagaagtatggcgatcaagtgttgcctctctacagt
tttgtgaattatgctattgatagaagtttcaatgttgatgaggccagtggatga
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