Trifolium pratense (red clover): 123919032
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Entry
123919032 CDS
T08949
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123919032
09122 Translation
03013 Nucleocytoplasmic transport
123919032
03015 mRNA surveillance pathway
123919032
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123919032
03041 Spliceosome [BR:
tpra03041
]
123919032
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123919032
Spliceosome [BR:
tpra03041
]
Complex C
Other components
EJC/TREX
123919032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
123919032
NCBI-ProteinID:
XP_045827210
LinkDB
All DBs
Position
LG3:complement(8551205..8556081)
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AA seq
739 aa
AA seq
DB search
MSSTCPIGNDQPIDQLKVTELNDELKRTELATKGLKEDLINCLDEVLAIEKEKDDVSGFN
GNASDTDEKGNTAKVHPVETGNEEMIPEVVNNDSGKSDITKLVGNDCSAMADQVVDHMDL
SADADSANVAEDLVHSSTKETAVTVSESVLTEATVVSGQEDSCISEPQNGHDQDSVTKQV
SEESKPQLECDIKPPCENLTPDSLLSENQVSEVNTSLGSQVQSDSVSSNCVSINQKNELN
DTIIANNINLEQEIVRSEMVEEPSSKIDVPVYDELHSMDVEELDKKKASVEENSSNNKSP
SPDKTNSSEDVGYPEKLNLDRSSGDDSMEEDLPESKQSDSKFNVDELGVKGESVERPIVK
EECGPAVVGEGLSEKGGTDHNNNIPAVSLVKKQKIHDRISVRDNQPKKRQRMWNSETVKD
SNPQMSTVRPATAPKGEPNAFKRNLSRSDSSAINDAPKERFVPPSQRHPTNSLRIDHFLR
PFTLKAVHELLDKTGNFTSFWMDEIKTHCYVSYSTVEEATETRNAVYNLQWPPHGGRLLV
AEYVDPQEVQMKLRPPPHVAVNIDSTVPPETPTSLPEPSSCQHREQPPVPVTFPPPPPLS
QLPPAAREWLPPPPAREWLPPPPTREWLPPPPTREWLPPPPAREWLPPPPLLSGPPQPLL
SDPLPAARERLPPSLSELPPAAREQLPLPTSLPENVDRPVRTIDDVFRKTIATPQIYYLP
LSEEQVAAKLAAQSRSVKQ
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgacatgtccgatcggtaatgatcaacctattgatcaattgaaagttactgag
ctgaatgatgagcttaagagaacggaactagctacgaaaggtttaaaggaagatttgata
aactgtttggatgaagttcttgccattgaaaaggagaaggatgatgttagtggtttcaat
ggaaatgcttctgatacagatgaaaagggtaacactgccaaagttcatccagttgaaaca
ggaaatgaagaaatgattccggaggttgtgaataatgacagtggaaagagtgatatcacc
aagctggttggcaatgattgtagtgcaatggcagaccaagtagtggatcatatggactta
tcagctgatgcagattctgcaaatgtggcagaggacttagttcactcttctactaaagag
accgctgtgacagtctccgagagtgtcttaacagaagcaacagtagtcagtggtcaggag
gattcgtgtatttcagaaccacagaatggtcatgatcaggattctgtaaccaagcaggta
agcgaggagtcaaagccccagctggagtgtgacataaagcccccgtgtgagaatctcaca
cccgactctttgctttctgaaaatcaggtatctgaggtcaacactagtttagggtcacaa
gtacaatctgattctgtttctagtaactgtgtgtcgattaatcaaaagaatgaactgaat
gatactataattgctaataatatcaatttagaacaagaaattgttaggtcagagatggtg
gaagaaccatcatccaaaattgatgtccctgtttatgatgaattgcattcaatggatgtt
gaagagctagacaagaaaaaggcatctgttgaggaaaatagcagtaacaacaaaagtcca
agcccggacaagaccaatagcagtgaagatgtaggttatccagaaaagttaaacttggat
agaagttctggtgatgattccatggaagaggatttgccggagagcaagcaatctgattct
aagtttaatgttgatgaacttggagtgaagggggaaagtgttgaaaggcctattgtgaag
gaggaatgtggtcctgctgtggtgggagaaggtctatcagaaaaaggcggtaccgaccac
aataataatattcctgctgtttcccttgtcaagaaacaaaaaatacatgatcgaatatca
gttcgggataatcagcctaaaaaacgacaaagaatgtggaactctgaaacagttaaagat
tcaaatccgcaaatgtctactgtcagacctgctactgcaccaaagggtgagccaaatgct
ttcaagcgcaatttatctcggtctgattcctcagcaattaatgatgcgcccaaagaacgc
tttgttccaccatcacaaaggcacccaactaattccctcaggattgatcatttcctccga
ccttttaccttgaaagcagtgcatgaactacttgacaaaactgggaatttcactagtttt
tggatggacgaaataaaaacccattgctacgtcagttactcaactgtcgaagaagccact
gagacccgaaatgctgtttataatcttcaatggcccccacatggtggacgccttttagtt
gctgagtatgttgatccccaagaagtgcaaatgaagctaagacctcctcctcatgttgct
gttaacattgattcaacagttcctcctgaaacacctacctcgctgccagagccttcctcc
tgtcagcacagggagcagcctccagttccagtcacatttcctcctccaccaccattgtca
cagctcccgccagcagctagagaatggcttccaccgccaccagctagagaatggcttcca
ccgccaccaactagagaatggcttccaccgccaccaactagagaatggcttccaccgcca
ccagctagagaatggcttccaccgccgccacttttgtcagggcccccacaaccacttttg
tcagatcctctgccagcagctagagaacggcttccaccatcactgtcggagcttccgcca
gctgctagagagcagcttccgctgccaacatcccttccagagaatgttgatcgacctgtt
cgtacaatcgatgatgtctttcgcaaaaccatagcaactcctcaaatctactatttacct
ttatccgaagagcaagttgcagcaaaactggcagcacagagcagaagtgttaagcagtag
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