Trifolium pratense (red clover): 123919483
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Entry
123919483 CDS
T08949
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03030
DNA replication
tpra03410
Base excision repair
tpra03420
Nucleotide excision repair
tpra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
123919483
03410 Base excision repair
123919483
03420 Nucleotide excision repair
123919483
03430 Mismatch repair
123919483
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpra03032
]
123919483
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123919483
DNA replication proteins [BR:
tpra03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
123919483
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
123919483
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_19
PTCB-BRCT
RCF1-5-like_lid
AAA_30
AAA_22
AAA_5
Rad17
RuvB_N
nSTAND3
AAA_assoc_2
BRCT_2
AAA_14
MS_TIM-barrel
Sigma54_activ_2
RNA_helicase
Zeta_toxin
AAA_18
AAA_33
TsaE
NTPase_1
AAA_16
NPHP3_N
AAA_17
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
123919483
NCBI-ProteinID:
XP_045827355
LinkDB
All DBs
Position
LG4:complement(14082374..14091937)
Genome browser
AA seq
995 aa
AA seq
DB search
MSDIRKWFMKSHDKTNNADGNSNKPSGQPKPTPAKPDLEKTVPEGQTSSGRRKTSKYFNT
DKPKAKEEVETQVLPAKRKNTKDSNEDDEDDSVLPTNQKKLAGSTPTKKLKSGSGRGIPQ
KPANLDESDEDDQKDAVSPIKSGGRGRGGRGASTQATGGRGRGGGRGTTQKSADLEEIDE
DDDKNAVSPAKSGGRGRGGRGASTQASGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGA
PNCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDDDIGGRKSEKAK
ELGTSFLTEDGLFDMIRASKPAKAPKQEECKKPVNKAVAAPLPSPSKVPLKAETKASLSS
CSLSNKAKPEKATTVQSNLTWTEKHRPKNAKDIIGNQSLVSQLRNWLKGWHEQFSNTGGN
EKGKKQNDPNFKKAVLLSGTPGIGKTTSAKLVCQELGFEAMEVNASDSRGKADSKIEKGI
SGSNANSIKEFVDNKTLEFGDKDRSKQSKTVLIMDEVDGMSAGDRGGVADLIASIKISKI
PIICICNDRYSQKLKSLVNYCLLLSYRKPTKQQMAKKFMEVAKAEGLQVNQIALEELAER
VNGDMRMALNQLQYMGLTMSVINYDDIRQRLLTNAKDEDISPFTAVDKLFGFNAGKMKWD
ERINLSMSDPDLVPLIIQENYINYRPSSVSKDDNGIKRMNLIARAAESIASGDIVNVQIR
RYRQWQLSQTSSVASCILPASLLHGQRETLEPGERNFNRFGGWLGKNSTTGKNMRLMDDL
HVHILASRESSSGRNTIRLEYLSLMLKKLTEPLRVLPKAEAVEKVVEFMNTYSISMEDFD
TIVELSKFKGHANPLDGIQPAVKSALTKAYKELSKTRTVRAADLITLPGIKKAPKKRIAA
ILEPADEGVEQGDGGNALDESDEDNTSDNDESEGATTGEKLKSELQSLNSKGMQVQLELK
GAGSSKKTSGGRGKGASTSAQKVAQTSKTPAKRKR
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatataaggaagtggttcatgaaatcacatgataaaacaaacaatgccgacggt
aactccaacaaaccctccggtcaacctaaacctactccggctaaacccgacctggagaaa
actgtgcctgaaggtcaaacaagttcgggcagaaggaaaactagcaaatattttaatacg
gataagccaaaggcaaaagaagaggtagaaacgcaggtgctccctgctaaaagaaagaat
acgaaggacagtaatgaagatgatgaagatgactctgttctgcccactaatcaaaagaaa
ttagctggttccactcctacaaaaaaattgaagagtgggtcgggtaggggaatcccccag
aaacctgcaaatttggatgaaagtgatgaagacgatcagaaagatgctgtgtctcctatt
aaatctggtggaaggggtcgtggtggaagaggagcatcaacacaagcaactggtgggaga
ggccgagggggtggtagggggaccacccagaaatctgcagatttggaagaaattgatgaa
gatgacgacaaaaatgctgtgtctcctgctaaatctggtggacggggtcgtggtggaaga
ggagcttcaacacaagcatctggtggaaggggccgagggggtggtaggggtggattcatg
aattttggtgaaagaaaagatcctccacacaagggagaaaaggaagtccctgaaggtgct
cctaactgtttagctggtttaacttttgtaatcagtggaacactggacagtttggaacga
gaagaagctgaagatttgattaaacgccatggtggccgtgtcactggatcagtcagcaag
aaaacgaattatttgttatgtgacgatgatattgggggaaggaagtctgaaaaagcaaaa
gagctaggaacttcattcctcacagaggatggattgtttgatatgatccgggcatcaaaa
cctgcaaaagctcccaagcaagaggaatgcaaaaaacctgtgaataaggctgttgcagcg
ccactgccatccccgtcaaaagttcctctgaaagcagaaacaaaggcctcattgtcttca
tgctcactttccaacaaagccaagcctgagaaggctactaccgttcaatctaatttgacg
tggacagagaaacatcgacctaaaaacgcaaaggatatcatagggaatcagtcacttgtt
tcacagcttcgaaattggttgaaaggttggcatgagcaattttctaacactggtggcaat
gaaaaaggaaaaaagcagaatgaccctaatttcaaaaaggctgtcttgttaagcggaacc
cctggtataggcaaaacaacttcagcaaagctggtgtgtcaggagcttggtttcgaagcc
atggaggtaaatgctagtgatagccgtggaaaagctgatagcaaaattgaaaagggaatt
agtggaagcaatgcaaattctatcaaggaatttgtggacaataagaccttggaatttggg
gacaaggataggtcaaagcagtccaaaactgttcttattatggatgaggttgatgggatg
tcagctggtgataggggtggtgttgctgatcttattgctagcatcaagatatcaaaaatt
cctatcatctgcatttgtaatgaccgttatagccagaaactaaaaagcctagtgaactac
tgtttgcttcttagttaccggaagcctacaaagcaacagatggcaaagaagttcatggag
gttgcaaaggctgaagggcttcaagttaatcagattgctcttgaggaattagctgaaaga
gttaatggagatatgcgtatggcactaaaccagttacaatatatgggcctcaccatgtca
gtgatcaactacgatgatattaggcagcgcttgctcaccaatgcgaaagatgaagatatt
tcaccattcacggctgttgataagctttttggttttaacgctggaaagatgaaatgggat
gagaggattaatcttagcatgagtgatcccgatcttgttcctctgattatccaggaaaat
tatattaattatagaccaagctctgttagtaaggatgacaatggtataaaacgcatgaac
ttgattgcccgtgctgctgagtctattgccagtggggatatagtgaacgtgcaaattcgc
agatatcgacaatggcagctctctcaaactagttctgtagcatcatgcatacttcctgct
tcattgttacatgggcaaagggaaacacttgaaccgggagaacgtaattttaatcgattt
ggtgggtggctgggaaagaattcgacaacgggtaaaaacatgaggcttatggacgacctg
catgttcacattcttgcatctcgcgaatctagttcgggaaggaatactattcgcttggaa
tacctttctcttatgcttaaaaaacttacagaacctctccgagtcctgcctaaggctgaa
gctgttgagaaagttgtggaatttatgaatacatattcaatcagcatggaagattttgat
actatagtagaattatcaaaattcaagggtcatgctaatccgctagatggcatacagcct
gccgttaagtcagccttgacaaaagcatacaaagagctgagcaaaactcggacggttcga
gctgctgatctaattactcttcctggaattaaaaaggcacctaagaagcggattgctgct
attttagaaccagctgatgaaggtgtggaacaaggtgatggtggcaacgccttggacgag
agtgatgaagataacacctctgacaatgatgagtcagaaggcgccacaactggcgagaag
ctgaagtcagaacttcaaagtttgaattcaaagggcatgcaagtacaattggaattgaag
ggagcaggaagttccaagaagacatctggtggtagaggtaaaggtgcttccacatctgcg
cagaaggttgctcaaacatcaaagactcctgcaaaaagaaaaaggtga
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