Trifolium pratense (red clover): 123919506
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Entry
123919506 CDS
T08949
Name
(RefSeq) splicing factor-like protein 1
KO
K13095
splicing factor 1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123919506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123919506
Spliceosome [BR:
tpra03041
]
Complex A
Other components
Complex A specific factors
123919506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
RRM_1
KH_1
zf-CCHC
KH_12
KH_PNO1_2nd
PHD_4
RRM_7
RRM_5
Motif
Other DBs
NCBI-GeneID:
123919506
NCBI-ProteinID:
XP_045827378
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Position
LG4:11448387..11452527
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AA seq
775 aa
AA seq
DB search
MDALNSNPPCDLPPHNTTTSDYNNQSQTLIPENGINNGNQSHNGQTTITVTDNNDSRPHI
HNPLLSDNGLTANTRSGTDKDQSGGEEETTSKRRRRSRWDPQPDSNDQTSGETGGTKKRK
SRWADDEPKPVIQLPDFMGGIEFDPEIQALNSRLLEISRMLQSGLPLDDRPEGARSPSPE
PIYDNMGIRINTREYRARERLQKERQEIISQIIKKNPAFKPPADYRPPKLQKKLYIPMKE
YPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDLKPDPSENEDLHV
LVEADTADALEAAAGMVEKLLQPVDEVLNEHKRQQLRELAALNGTIRDEEYCRLCGEPGH
RQYACPTRTSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGTVPESA
IKQTSTLAIGSGNSGSNPPWANNSSPSTPTPGLGAGAAKKEIDDTNLYIGYLPPTLEDDG
LIQLFQQFGEIVMAKVIKDRMTGLSKGYGFVKYADITMANNAIVAMNGYRLDGRTIAVRV
AGKPPQPVVPPGPPASAVPTYPVQSQPLGAYPSQQYTGGGPLGSAPPGSYGGTPVPWGPP
MPPPYNPYAPPPPGSTMYPPMHGQPMPPYGVQYPPMPTGPPGATSQPAASGEMQQNYPPG
VQSDNNTSTQSLPTNMYGSTIPSMPPAAPPSYPASYGYPPPPYYNAVPPPPPPPTSDQPS
IANAPWASNHSVPPPPSSADQSQSIGNAPMPPNSSAEKTSYGADSEYEKFMAEMK
NT seq
2328 nt
NT seq
+upstream
nt +downstream
nt
atggacgctctcaattccaatcctccatgcgatctccctccccacaacaccaccacatca
gactacaacaaccaatcccaaaccctaattcccgaaaacggcatcaacaacggaaaccaa
tcccataacggtcaaaccactatcaccgtcacagataacaacgattcacgtccacatatt
cacaatccccttctctccgacaatggtttaactgccaatacccgaagcggaactgataag
gatcaatcaggtggtgaagaagagacaacgagcaaacgacgtcgtcgtagtcggtgggat
ccacagccagattcaaacgatcagactagcggcgaaacgggcgggacgaagaaaaggaaa
tctcgttgggctgatgatgaaccgaaaccggtaattcaacttcctgattttatgggtggt
attgaatttgatcctgaaattcaagctttgaatagtagattacttgaaattagtagaatg
ttgcaatctggtttacctttagatgatcgtcctgaaggtgctagatctccttcacctgaa
cctatatatgataatatgggtattagaattaatactagagagtatcgtgctcgcgagaga
ttgcagaaagaaagacaagaaattatatctcagattattaagaaaaacccggcttttaag
cctcctgctgattatagaccaccaaagcttcagaagaagctttatataccgatgaaagaa
tatccgggttataatttcattgggcttattattggtcctaggggtaatactcagaaacgg
atggagaaggagactggcgctaagattgtgattcgaggtaaagggtcggtgaaagaaggt
aggttgcaacagaagagggatttgaagcctgatccttcggagaatgaagatttgcatgtt
ttggttgaggcggatacggctgatgcgcttgaagctgctgctggtatggttgagaagctc
ttgcagcctgtggatgaggttttgaatgagcataagaggcaacagcttagggaacttgct
gctttgaatgggacaattagggatgaggagtattgtaggttgtgtggcgaacctggtcat
cgccaatatgcttgtcctacgaggacttcaacatttaagagtgaagttgtttgtaagcat
tgtggggatggtggtcatcctagcatagattgtccggtgaagggtgctacagggaagaag
atggatgatgagtatcagaattttctggctgagttgggcggtacagttcctgaatctgca
ataaagcaaactagtactttggcaattgggtcgggcaattctggaagcaatcctccttgg
gctaacaattctagtccgagtactccaacacctgggttaggggctggtgcagctaaaaag
gaaattgatgatacaaatttgtacattgggtatctgccacccactcttgaggatgatggc
ctgatccaattgtttcaacaatttggtgagattgttatggctaaagtcattaaagatcgt
atgacaggattgagtaaaggatacgggtttgtgaagtatgctgatatcacaatggcaaac
aatgcaattgtcgccatgaatggttatcgccttgacggtcgaaccattgcagtgagagta
gctggtaagcctcctcagcctgttgtacctcctggcccaccagcatcggctgtgcccact
tatcctgttcaaagccagccacttggtgcctatccatcccaacaatatactggcggtggt
ccccttgggagtgctcctcctgggagttatggcggtaccccagttccgtggggacctcct
atgcctcctccatacaatccttatgctcctcctccacctgggtcaactatgtatcctcct
atgcatggtcaacccatgcctccttatggtgttcaatatcctcccatgccaacaggcccc
cctggtgccacgtcccagccagcggcttctggtgaaatgcagcagaattaccctcctgga
gtgcagtctgataataatacatctactcagtctctaccgaccaacatgtatgggagcaca
ataccttcaatgccacctgcagctcctccatcatatcctgcatcttatggatatcctcct
ccaccttactacaatgcagttcctccaccacctccccctcctacttcagaccaacccagc
attgctaatgcgccttgggccagtaatcattcggtaccacctcctccttcatctgcagat
caatcccaaagcattggaaatgcacctatgcctcctaactcatcggcggagaagacatca
tatggagctgattcagagtatgagaagttcatggcagagatgaaatga
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