Trifolium pratense (red clover): 123919808
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Entry
123919808 CDS
T08949
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123919808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123919808
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
123919808
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
Zn_Ribbon_1
zf-C3HC4_3
DUF1258
Motif
Other DBs
NCBI-GeneID:
123919808
NCBI-ProteinID:
XP_045827770
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Position
LG4:complement(4344045..4351486)
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AA seq
543 aa
AA seq
DB search
MSMDLQLKSCCSGCGETTGLYGSNCKHMTLCSTCGKTMAENRAKCSTCGATLTRLIREYN
VRASSANDKNYFIGRFMAGLPDFSKKKSAENKWSLQKDGLKSRQVTDSMREKYKNKPWLL
EDETGQSQFQGHLEGSQSATYYLLMKEKKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM
KNRKKTADGYQRWMMKAANNGPAAFGEHVKLEDKESNAGGGRSRKKTGDEDDEGPSSDKG
EEDEDEEVDRKKRLGLNKKNGYDDDEEGPRGGDLDDDDFDVEKGDDWEHEEIFTDDDEGV
DNPDEREDLAPEIPAPPEIKQDDDDEEEEGENNEEGGGLSKSGKELKKLLGRSGGLSESD
ADDDDDDDDDDDIDDDVGIPPVTAAKQKEPKEEPVDNSPSKPTATGPARGTPTSKSSKGK
RKANEEAKPSVGVPPKKVKTENEPKSSGKDVNGSASKSNAPPKGTPLPSSNAGSSNAASG
PVTEQEIRAVLMQRTPLTTQELVAKFKGRLRCAEDKQAFAEILKRISKIQKTNGSSYVIL
RGK
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatggatcttcagttgaaatcatgttgtagcggatgtggagaaaccacgggtcta
tatggaagcaattgcaagcatatgactttgtgctccacctgtggaaaaaccatggctgaa
aatcgcgccaaatgttccacctgtggcgccacactaactcgtttgattcgagaatataat
gttcgtgctagttctgccaacgataaaaattactttattggaaggtttatggctggtttg
cctgatttttcaaagaagaaaagtgctgaaaataagtggtctttgcagaaagatggattg
aagagtcgccaagttactgattctatgagggagaagtacaagaacaagccttggctattg
gaggatgaaacaggccagtcccagtttcagggtcatctggaaggttcacaatcggctaca
tattacctgctaatgaaggaaaagaaggagtttgttgctattcctgctgggtcctggtac
aactttaacaaggttgcacaatataagcagttgactttggaggaagcagaagagaagatg
aaaaataggaaaaaaactgctgatggatatcaaagatggatgatgaaagcagcaaataac
gggcctgctgcatttggtgaacatgtgaagttagaggacaaggaaagcaacgcaggtggt
gggagaagccgtaaaaaaactggtgatgaggatgatgaaggcccttcttctgataaagga
gaggaagatgaagatgaggaagtagatagaaagaaaagacttggactgaataaaaaaaat
ggctatgatgatgatgaagaaggtccaaggggaggggatctagatgacgatgattttgat
gttgaaaagggtgatgattgggagcatgaagagattttcactgatgatgatgaaggtgtt
gataatcccgacgaaagggaagatttggctcccgaaatccccgctcctcctgaaatcaag
caggatgatgatgatgaggaggaggagggtgaaaataatgaagaagggggaggtctgagt
aaatctgggaaagagctgaagaagctgcttggacgaagtggtggtctgagtgaatctgat
gcagatgatgatgatgacgatgatgacgacgacgacattgatgacgatgtcgggattcct
cctgtgactgctgcaaagcagaaggaacctaaggaagagcctgttgacaacagtccttcg
aaacctacagcaacaggacctgctcgtggaacacctacttcaaagtcttcaaaggggaaa
agaaaagcaaatgaggaagcaaagccatctgttggtgtaccacctaagaaggtgaagaca
gaaaatgaaccaaaatcatctggaaaagatgtaaacggatctgcatctaaaagtaatgca
cctccaaaaggcacaccgctaccgtcatcaaatgctgggtcttctaacgcagcttctggg
cctgtaactgagcaagaaattagggctgttctaatgcaaaggactccattaactactcag
gagcttgtagctaaatttaagggaagattaagatgtgcagaggacaagcaagcttttgct
gagatcctgaagagaatctctaagatacagaaaactaatggatccagttatgttattctg
agagggaagtaa
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