Trifolium pratense (red clover): 123919891 Help Entry 123919891         CDS       T08949                                  Name (RefSeq) DNA ligase 1-like isoform X1   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism tpra  Trifolium pratense (red clover) Pathway tpra03030   DNA replication tpra03410   Base excision repair tpra03420   Nucleotide excision repair tpra03430   Mismatch repair Brite KEGG Orthology (KO) [BR:tpra00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     123919891    03410 Base excision repair     123919891    03420 Nucleotide excision repair     123919891    03430 Mismatch repair     123919891  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:tpra03032]     123919891    03400 DNA repair and recombination proteins [BR:tpra03400]     123919891 Enzymes [BR:tpra01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      123919891     6.5.1.6  DNA ligase (ATP or NAD+)      123919891     6.5.1.7  DNA ligase (ATP, ADP or GTP)      123919891 DNA replication proteins [BR:tpra03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     123919891  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      123919891 DNA repair and recombination proteins [BR:tpra03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      123919891    NER (nucleotide excision repair)     Other NER factors      123919891    MMR (mismatch excision repair)     Other MMR factors      123919891 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  123919891 NCBI-ProteinID:  XP_045827869 LinkDB All DBs Position LG4:16677960..16685196 Genome browser AA seq 800 aa AA seqDB search MFALHFKPYFSLPPLLFRISVNTSSSNLTFPLSLTPRRKMSKPPPSAFDKLMSGARAAAA KKKPPPSSSSPKKRKSPPPPPSPSPSPLSPPAQNPNNNLKTLETVETVEPPNKIRNTSSS SKGIISELKELIPQLKKKPPSFDPSSVVCWEKNKPVPFLFLCLAFDMINEESGRIVKTDI VCNLLRTVIYTTPEDLVPVVYLSANRIAPAHEGLELGIGDASIIKALAEACGRTEQQIRI QYKEKGDLGLVAKASRSSQSMMRKPEPLTIRKVFKTFHLIAKESGKDSQEKKKNHIKSLL VAATDCEPLYIIRLLQAKLRIGYAEQTLLAALGQAAVYTEEHSKPPPEIKSPFEEAAMIV KKVYSVLPDYDKIVAALLTDGVWELPKKCDFTPGVPVGPMLSKATKGVSEILNKFQDVEF TCEYKYDGERAQVMLHGHIFHQKCTDYDTYYAITLVVLRQIHYMENGSVEIYSRNAERNT GKFPDVVAAVSRLKKPTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVAISDIKVDV CVFAFDLLHLNGQALLQENLKIRRKHLYASFEVESGFFQFATSTTSNDVEEIQKFLDQAI DASCEGLIIKTLHEDATYEPSKRSLNWLKLKKDYMDNIGDSLDLVPIGAFHGRGKRTGVY GAYLVACYDKENEEFQSIVKLATGFTEEELEERSAILRSKIIPKPKAYYKCGESINPDVW FEDSEVWEVKAADLTISPVYRAAVGIVDSNKGISLRFPRFVRVRPDKTPDQATPSEQIAE MYNKQKHNQTNNQDDDEDDD NT seq 2403 nt NT seq  +upstreamnt  +downstreamnt atgttcgcattacatttcaaaccgtatttttctcttccgccgttattattccgcatttcc gttaacacttcttcttccaatttaacatttcctctctcactaacccctcgccgtaaaatg tcaaagccaccaccttccgccttcgacaaactcatgtccggtgcacgcgccgccgcagcc aagaagaaaccaccaccttcttcctcatctcccaagaaacgaaaatcccctccccctcct ccttctccatctccatctccactctcccctcccgctcaaaaccctaacaacaatctcaaa accctagaaaccgttgaaactgttgaaccaccgaacaagatccgcaacacttcatcttct tccaaggggataatttccgaattgaaggagctaattccacagctgaagaagaaaccgccg agtttcgatccaagttcggtcgtttgctgggagaaaaacaaacctgtgccgtttttgttc ctttgtttggcgtttgatatgattaacgaagagagtgggaggattgtgaaaactgacatt gtgtgtaatctgttgaggacggtgatatacactacaccggaggatcttgtgccggttgtt tatctttctgctaatagaattgctccggctcacgaagggttagaattgggaattggcgat gcttctattattaaggctctcgctgaggcgtgtggaaggactgagcagcagattaggatt cagtacaaggaaaaaggtgacttaggtttagttgcgaaagctagccgttcttcacagtct atgatgcggaagcctgaacctttgactattaggaaggttttcaagacatttcatcttatt gctaaggaatctggaaaagacagtcaagagaagaaaaagaatcacataaagtcacttctt gttgctgcaactgattgtgaacctctatatataatccgtttgctacaggcaaaattgcga attggatatgccgaacaaactctcttagctgcattaggccaagctgcagtatacactgaa gaacattctaaaccgcctccagaaattaagtctccatttgaagaggctgcaatgattgtt aaaaaagtttattctgttcttcctgattatgacaaaattgtggctgcactccttacggat ggtgtatgggaacttccaaagaagtgtgattttactcctggtgttccggttgggcctatg ctgtcaaaagcaaccaagggtgtatctgaaattctaaataaatttcaggatgtagagttt acgtgtgagtacaaatatgatggagagcgtgctcaggtgatgcttcatggtcatatattc catcagaaatgcacggattatgatacttattatgcaataacattagttgtattgagacag atacattacatggagaatggctcggtggagatttacagtagaaatgctgaaaggaacact gggaagtttcctgatgttgttgctgcagtttcaaggctaaagaaaccaacagtatcatct tttatccttgattgtgaactcgttgcatatgatcgtgcaaaacagagaatccttccattc caggtgcttagtactcgagcccgcaaaaatgtagcaataagtgacataaaggttgatgtt tgcgtatttgcttttgacttgttgcaccttaatggccaagcacttcttcaggaaaacctt aaaatccgtagaaagcatctctacgcctcttttgaggtagagtctggattctttcagttt gcgacatcaacgacatcaaatgatgttgaggagatacaaaaatttcttgaccaagctatt gatgcaagttgtgagggattaatcattaaaacattacatgaagacgccacatatgaaccc tccaagcggtcgctcaactggctgaaactgaagaaagattatatggacaatataggggac tccctggatttggtacctattggtgctttccatggtcgtggtaaacgcacaggagtgtat ggtgcttatctcgttgcttgctatgacaaagagaacgaagaatttcaaagtattgtcaag ttagcaactggattcacagaagaggagcttgaagaacgttctgctatccttcgctctaaa attattcccaaaccaaaggcatattataaatgtggagaatcaatcaatcctgatgtctgg tttgaagatagtgaggtgtgggaggtgaaagctgcagatctgaccattagccctgtttac cgagctgcagtgggcatagtagattccaataagggcatatctcttcggtttccacgtttt gttcgagttcggcctgacaaaactcctgaccaggccactccgtctgagcagattgctgaa atgtataataagcaaaaacacaaccagaccaacaaccaggatgacgatgaagatgatgat taa

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