KEGG   Trifolium pratense (red clover): 123919892
Entry
123919892         CDS       T08949                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03030  DNA replication
tpra03410  Base excision repair
tpra03420  Nucleotide excision repair
tpra03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    123919892
   03410 Base excision repair
    123919892
   03420 Nucleotide excision repair
    123919892
   03430 Mismatch repair
    123919892
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tpra03032]
    123919892
   03400 DNA repair and recombination proteins [BR:tpra03400]
    123919892
Enzymes [BR:tpra01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     123919892
    6.5.1.6  DNA ligase (ATP or NAD+)
     123919892
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     123919892
DNA replication proteins [BR:tpra03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    123919892
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     123919892
DNA repair and recombination proteins [BR:tpra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     123919892
   NER (nucleotide excision repair)
    Other NER factors
     123919892
   MMR (mismatch excision repair)
    Other MMR factors
     123919892
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 123919892
NCBI-ProteinID: XP_045827871
LinkDB
Position
LG4:16696769..16705519
AA seq 787 aa
MLTQNLIVVPQNLCSRQLHPGNTIPSSVINLLFRIPVNSSCSSNLTFPLSLTPRREMSKP
PSAFDALMSGARAAAAKKKPPPSSSSPKKRKSPPPPPSPSPSPLSPPAQNPNNNLKTLET
VKTVEPPNKIRNTSSSSKGIISELKELIPQLKKKPPSFDPSSVVCWEKEKPVPFLFLCLA
FDMINEESGRIVKTDIVCNLLRTVIYTTPEDLVPVVYLSANRIAPAHEGLELGIGDASII
KALAEACGRTEQQIRIQYKEKGDLGLVAKASRSSQSMMRKPEPLTIRKVFKTFHLIAKES
GKDSQEKKKNHIKSLLVAATDCEPLYIIRLLQTKLRIGYAEQTLLAALGQAAVYTEEHSK
PPPEIKSPFEEAAQIVKKVYSVLPDYDKIVAALLTDGVWELPKKCDFTPGVPVGPMLSKA
TKGVSEILNKFQDVEFTCEYKYDGERAQIHYLENGSVEIYSRNAERNTGKFPDVVAAVSR
LKKTTVSSFILDCELVAYDRAKQRILPFQVLSTRARKNVAISDIKVEVCVFAFDLLYLNG
QALLQENLRIRREHLYASFEEESGFFQFATSTTSNDVEEIQKFLDQAIDASCEGLIIKTL
HEDATYEPSKRSLNWLKLKKDYMENIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDNDN
EEFQSIAKIGTGFKEEVLEERSTSLRSKVIPKPKSYYQYGESTNPDVWFEASEVWEVKAA
DLTISPVYRAAVGKVDSNKGISLRFPRLVRVRPDKAPEQASSSEQVAEMYTAQKHNHNDK
QDDEEDD
NT seq 2364 nt   +upstreamnt  +downstreamnt
atgttgacgcaaaatcttatcgtagtcccccaaaatctatgttcccgccaattacatccc
ggcaacactattccgtcttccgttattaacttattattccgcattcccgttaattcttct
tgttcttcaaatttaacatttcctctctcactaacccctcgccgtgaaatgtcaaagcca
ccctccgccttcgacgcactcatgtccggcgcacgcgccgccgccgccaagaagaaacca
ccaccttcttcctcatctcccaagaaacgaaaatcccctccccctcctccttctccttct
ccatctccactctcccctcccgctcaaaaccctaacaacaatctcaaaaccctagaaacc
gttaaaactgttgaaccaccgaacaagatccgcaacacttcatcttcttccaaggggata
atttccgaattgaaggagctaattccgcaactgaagaagaaaccaccgagtttcgatcca
agttctgttgtttgctgggagaaggaaaaacctgtaccatttttattcctttgtttagcc
tttgacatgattaacgaagaaagtggaaggattgtgaaaactgacattgtgtgtaatctg
ttgaggacggtgatatacactacaccggaggatcttgtgccggttgtttatctttctgct
aatagaattgctccggctcacgaagggttagaattgggaattggcgatgcttctattatt
aaggcgctcgccgaggcgtgtggaaggactgagcagcagattaggattcagtacaaggaa
aaaggtgacttaggtttagttgcgaaagctagccgttcttcacagtctatgatgcggaag
cctgaacctttgactattaggaaggttttcaagacatttcatcttattgctaaggaatct
ggaaaagacagtcaagagaagaaaaagaatcacataaagtcacttcttgttgctgcaact
gactgtgaacctctatatataatccgtttgctacagacaaaattgcgaattggatatgcc
gaacaaactctcttagctgcattaggccaagctgcagtgtacactgaagaacattctaaa
ccgcctcctgaaattaagtctccatttgaagaggctgcacagattgttaaaaaagtctat
tctgttcttcctgattatgacaaaattgtggctgcactgcttacggatggtgtatgggaa
cttccaaagaagtgtgattttactcctggtgttccggttgggcctatgctgtcaaaagca
accaagggtgtatctgaaattctaaataagtttcaggatgtagagtttacgtgcgagtac
aaatacgatggagagcgtgctcagatacattacctggagaatggctcagtagaaatttac
agtagaaatgctgaaaggaacactgggaagtttcctgatgttgttgctgcagtttcaagg
ttaaagaaaacaacagtatcatcttttatccttgattgtgaactcgttgcatatgatcgt
gcaaaacagagaatccttccattccaggtgcttagtactcgagcccgcaaaaatgtagca
ataagtgacattaaggttgaggtttgcgtatttgcttttgacttgttgtaccttaatggc
caagcacttcttcaggaaaaccttagaatccgtagagagcatctctacgcctcttttgag
gaagagtctggattctttcagtttgcaacatcaactacatcaaatgatgttgaggagata
caaaaatttcttgaccaagctattgatgcaagctgtgagggattgattattaaaacatta
catgaagacgccacatatgaaccctccaagcggtcgctcaactggctgaaactgaagaaa
gattatatggaaaatataggggactccctggatttggtacctattggtgctttccacgga
cgcggtaaacgtacaggagtgtatggtgcttttctccttgcttgctatgacaacgataat
gaagagtttcaaagtattgccaagataggaactggattcaaagaggaagtccttgaagaa
cgttctactagtcttcgctctaaagtgattcccaaaccaaagtcatattatcaatatgga
gaatcaaccaatcctgatgtatggtttgaagctagtgaggtgtgggaggtgaaagctgca
gatctgaccattagccctgtttaccgagctgcagtgggcaaagtagattccaataagggc
atatctcttcgatttccgcgtctagttcgagttcggcctgacaaagctcctgaacaggcc
tcttcgtctgagcaggttgctgaaatgtatactgcccaaaaacacaatcacaacgacaaa
caagatgacgaagaagatgattaa

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