Trifolium pratense (red clover): 123919932
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Entry
123919932 CDS
T08949
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123919932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123919932
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123919932
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Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
123919932
NCBI-ProteinID:
XP_045827942
LinkDB
All DBs
Position
LG4:17214506..17218169
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AA seq
260 aa
AA seq
DB search
MAGKSGMTPATYTPSPTTGKKKPAIIKEDWTRPDGRGFHQCRPAFFRTGAVNAASGSAYA
EFGNTKVIVSVFGPRESKKAMLYSDTGRLNCNVSYTTFSTPVRGQGSDHKEYSSMLQKAL
EGAIILESFPKTTVDVFALVLESSGSDLPVVISVASLALADAGILMYDLVTSVSVSCLGK
NLIIDPISEEENCQDGSLMITCMPSRYEVTQLTVTGEWSAPKISEGMQLCLDACKKLAKI
MRSCLKESASDAQGLENESS
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggccggtaaaagtggaatgactccggcgacatacacgccgtctccgacaaccggtaaa
aagaaaccagcaattatcaaagaagattggacccgacctgacggtcgtggcttccaccag
tgtagacccgcctttttcaggactggtgctgtgaatgctgcatcaggatcagcttatgct
gagtttggaaataccaaggtcattgtatctgtatttgggccacgagagagcaagaaggca
atgctttacagtgatacggggcgactaaattgcaatgtcagctatacaacgttttcaact
ccggttcgtggacagggttcagaccacaaagagtacagttcgatgcttcagaaagctttg
gagggtgcaataatattggaaagtttccccaagaccactgtggatgtgtttgcattggtg
ctggaatctagtggcagtgatctcccagttgtcatatcagttgctagtcttgccttggca
gatgctggaatactgatgtatgaccttgttacctcagtttctgtgtcatgtctcggtaag
aacctcatcattgatcctatttcggaggaggaaaactgccaagatggaagcttaatgatc
acatgcatgccttctcgctatgaagttacccaattgacagttactggtgaatggtccgcc
ccaaagattagtgaggggatgcagctgtgcttggatgcttgtaaaaagcttgcaaagatt
atgaggtcgtgtttgaaagaatccgcttctgatgcacagggattggagaatgagagttct
tag
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