Trifolium pratense (red clover): 123920028
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Entry
123920028 CDS
T08949
Name
(RefSeq) nuclear pore complex protein NUP96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123920028
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123920028
03036 Chromosome and associated proteins [BR:
tpra03036
]
123920028
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
123920028
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
123920028
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
123920028
NCBI-ProteinID:
XP_045828068
LinkDB
All DBs
Position
LG4:3723133..3730544
Genome browser
AA seq
1022 aa
AA seq
DB search
MECEVGSIFDSCIVHSYKKRRVSECCITSTNEIMTEIEASLPSLHSPGYYTEPSLKELAA
REALYPGYCSGVPDFTVGRFGYGYVKYLNKTDVRGLCLDDIVKFRRHDVVVYEDENDKPA
VGQGLNKAAEVVLVLDSGKSKSNECRDDVLVKKLKQSTERQGARFVSFDPVTCEWKFLVE
HFSRFGFDDDDEEDAVMDDAEAHDVEKESPTNIDEIELSHSLPAHLRLDPVKMREMRSLM
FPDEEEMEDLGRKSSFVKEHVRPLKSSAQFTTNRSTPPVVRNTPFPLLEYKHGNLDSNSP
GSILMVQQHKSTPLRTVKAQGFELDLKHETPVSGNYAHNIVDAGLFMGKSFRVGWGPNGI
LVHSGAFVGSGGDHKLLSSVVKLEKVAFDNLVRDENKKVSEELVDHALVSPLNFHKGIDH
VTNEVDFGPYRLALQKLEANRTNLSEISHQYCDIIERQLSVPGLPSSNRLGLTHQVMTWE
LIRVLFSEREQKCQIESLGADNEEDMMQDIKEVDQDVDQEALPLMRRAEFSYWLRESVSY
HVQNQISSLDDSHYLQHVFTLLTGRQLDEAVQLAVSKGDVRLACLLSQAGGSTLNRSDVA
KQLDIWRNKGLDFNFIEEDRLRLYELLAGNIHDALHDIQIDWRRFLGLLMWYKLPADTSL
PAAFETYKHFLDEGTAPYPVPLFIDEGTSEEVASWKADKHFDISFYLMLLHASEETEFSF
LRAMFSAFSSSPDPLDYHMIWHQREVLEAVGVINSNDLHILDMGFVSQLLCLGKVHWAIY
VALHLPHREDYPYLHVNLIREILFQYCETWSSDESQYRFIEDLGIPKEWMHEALAIYYNY
NGDLAEALEQFLKCANWQKAHTIFITSVAHKLFLQAKHAEIWRIATSMEDYKSEIENWDL
GAGIYISFYLMRNKLQGDTNAMTELDSLQSKNAACQEFVSQLNESLAVWGSRLPVDARVA
YSKMASQICDLLLSAVGEGATRDEQFCCFNTAFSAPIPEDLRSGHLQDAVYLFTSFLSEI
PA
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atggaatgtgaagtgggaagcatatttgattcttgtattgtgcatagttacaaaaaaaga
agggtttctgagtgctgcattacttcaacaaacgagataatgaccgaaattgaagcttca
ttgccaagcctacactcccctggttactatactgaaccttctttgaaggaattagcggcc
cgtgaggccctttaccccggttattgcagcggtgttcctgattttactgtcggaagattt
ggttatggatatgttaagtatcttaataaaactgatgtaagaggattatgtttagatgac
attgtaaagttccgtaggcatgatgttgtagtttatgaggatgagaatgataagcctgca
gttggtcagggccttaacaaagcagctgaagtggttttggtactagatagtggaaagtcg
aagtctaatgagtgccgcgacgatgttctagtgaaaaaattaaaacaaagtacggagaga
caaggagcgcggtttgtttcctttgatccggtaacttgtgagtggaaattcttagttgaa
cacttcagtagatttgggtttgatgacgatgatgaagaggacgctgttatggatgatgct
gaggcacatgatgttgagaaagaatcgccgacaaatatcgatgaaattgagctttctcat
tctcttcctgcccatcttaggctcgatcctgttaaaatgagagaaatgagatcattgatg
tttcccgatgaagaagagatggaggacttgggtcgcaaatcatcttttgttaaggagcat
gtgaggcctttgaaaagttctgctcagttcacgaccaatagatctactccaccagttgtt
cgaaatactccatttccattacttgagtataagcatgggaatcttgattcaaattctcct
ggatccatattgatggttcagcaacataagagcacgcctctgaggacagtaaaagcgcag
ggttttgagctggacctcaagcatgaaacgcctgtatctggaaactatgctcacaatata
gttgatgctggtctgtttatgggcaagtcatttcgtgttgggtggggaccaaatggcatt
cttgtacactctggtgcatttgtaggaagtggtggtgatcacaagctattatcatctgtt
gtcaagttggagaaagttgcttttgacaatttggtcagggatgaaaataaaaaagtgagt
gaagaacttgttgaccatgctttggtttctccattaaattttcacaaaggaatagaccat
gtgacgaatgaggttgactttggtccctacaggttagcacttcaaaagctcgaagctaat
cgtacaaacctatcagagatttctcatcaatattgtgatattattgagaggcaattgagt
gtgcctggcttaccttcctcaaaccgattaggtttgacacaccaagtaatgacctgggag
ttaattagagttcttttttctgagagagaacagaagtgtcaaatagaatctttgggtgct
gacaatgaggaagatatgatgcaggatataaaggaagttgatcaagatgttgaccaagaa
gcgctccctcttatgagaagagcagagttcagttattggttgcgagagagtgtctcctat
catgtccaaaaccaaataagctctctagatgactctcactatttgcaacatgtttttaca
ctcttgactgggcggcaattggatgaagcagtgcagttggctgtgtccaaaggagacgtg
aggttggcttgtttgttaagtcaggctggcggttctactctgaatcgctctgatgttgca
aagcaacttgatatttggaggaataaagggcttgattttaattttattgaagaagacaga
ttgagactctatgaacttctcgcgggaaatattcatgatgcattgcatgatattcaaatt
gactggaggaggttcttaggtttattaatgtggtacaaattacctgctgacacttcgtta
ccagctgcttttgagacttataaacattttcttgatgagggaacagccccatatcctgtt
ccactttttattgatgaaggaacatcagaggaggttgccagttggaaagcagataaacac
tttgacatttcattttatctcatgcttcttcatgctagtgaagagacagaattcagcttt
ctgagggctatgtttagtgccttctcatcatcccctgacccacttgactatcatatgatc
tggcaccaacgtgaagttttggaagcagtgggtgttataaattctaatgatcttcatatt
ctagacatgggatttgtatctcagctgttgtgcttagggaaagtccactgggccatatat
gtggcccttcacctgcctcatcgggaagattatccatatcttcatgtaaatctgattcgt
gaaatattgttccaatactgtgaaacttggagttcagatgaatctcagtatcgcttcatt
gaggatttaggcattcccaaagaatggatgcacgaggctttggcaatatattataattat
aatggggatctcgcagaagcccttgagcaatttcttaagtgtgcaaattggcaaaaagct
catactatttttataacttcagttgctcataagttattcttgcaagccaaacacgctgag
atatggaggattgcaacttcaatggaggactataaatctgaaattgaaaactgggatttg
ggagctggaatttatatttcattttatttgatgagaaacaaacttcagggagataccaat
gccatgactgaattggattctcttcaaagtaaaaatgctgcatgtcaggaatttgtcagt
cagttaaatgaatctttggctgtttggggttccagattacctgttgatgcaagagtggca
tattcaaaaatggcaagccaaatatgtgatttgctgttatctgctgttggtgagggtgcc
acacgcgatgagcagttttgttgcttcaacactgctttcagtgctcccattcctgaagac
ttacgctccggtcacttgcaggatgcagtgtatctgtttaccagctttttgtcagagatt
ccagcttaa
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