Trifolium pratense (red clover): 123920152
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Entry
123920152 CDS
T08949
Name
(RefSeq) probable rhamnogalacturonate lyase C isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
123920152
Enzymes [BR:
tpra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
123920152
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Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
123920152
NCBI-ProteinID:
XP_045828289
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Position
LG4:complement(27765225..27774797)
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AA seq
648 aa
AA seq
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MSSQVVQLHVKKNHVVLDNGILQVYLSNPDGFVTRIQYNGIDNLLEALNEKNNRGYWDLV
WSEAGSTGTTGTSERVVGTSFKVIMETEEQVEISFTRIWDQSLKGKQSALNIDKRYVMLS
NSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLRKDKFHYMAVADDRQRLMPLPDDRLPGRG
EELVPPEAVLLVNPVEPEFTGEVDDKYQYSSENINLKVHGWISTESETNPATGFWVIIPS
NEFRSGGLVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNTLL
DGNEDPLELWEDAKYQMNKEVQSWPYDFPASDDFQKPNQRGSVCGTLLVRDRCVSDECII
AQGAYIGLAPPGDVGSWQRECKGYQFWTKANKEGYFLINNIRSGDYNLYAWVPGFIGEYW
NNGVLKITSGCEINLGDIIYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKFINKLFIDHP
DKFRQFGLWERYAELYPDEDLIYTVGISDYTKDWFYAQVTRKKYDGSYQGTTWQIKFNLD
DVEANRIYKLRLALASANVSELQVRVNDLKQDPPLFTTGVIGKDNAIARHGIHGLYWLFN
IDVSSILLSQGDNTIFLTQAMATGPLALFQGIMYDYIRLEGPKYVSSH
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcacaagtagtgcagttgcatgtcaaaaaaaatcatgtagttttggacaatggt
atactacaagtgtatttatcaaatccagatggatttgtgactagaatacaatataatggc
attgataatctgcttgaagctcttaatgaaaagaataatcgagggtattgggatcttgtt
tggagtgaagcaggaagcaccggaacaaccggaacatccgagcgggttgtgggaacaagt
tttaaggttataatggaaacagaggaacaagttgaaatctcatttacaagaatatgggat
caatctctaaagggaaagcaatcagctctaaatatagacaaaaggtatgtgatgctaagc
aattcgtcaggattctactcttatgctatctttgagcacctgaaggagtggccagctttt
aacatacctcaaataaggattgtttataagcttcgtaaagacaagtttcattacatggct
gtggcggatgatagacagaggttgatgcctctacctgatgatcgattacccggaagagga
gaagaacttgttcctccagaagctgttttgcttgttaatccagttgaaccagagttcaca
ggagaggttgatgacaagtaccaatactcaagtgagaacataaaccttaaggttcatgga
tggataagtacagaatctgaaacaaatccagcaacagggttttgggtaatcatacccagc
aatgagtttcgatcaggtggccttgttaaacagaatctcacctctcatgttggccccatc
agtcttgcaatgtttcttagtgctcattacgcaggagaggatatagtgcttaaactccag
cccaatgagccatggaagaaagtttttgggccaacttttgtctatcttaacaccttgttg
gatggtaatgaggatccactagagctttgggaggacgccaaataccagatgaacaaggaa
gtacaaagttggccctatgattttccagcttcagatgattttcaaaagccaaaccaacgt
ggcagcgtttgtggcacattactagttcgtgacaggtgtgtaagtgacgagtgcataata
gctcaaggtgcatacataggattggcaccaccaggagatgttggatcttggcaaagagaa
tgcaagggataccaattttggaccaaagcaaacaaggaaggctactttttaatcaataat
ataaggagtggagattacaatctatatgcatgggttccaggttttattggagaatattgg
aacaatggagtcctcaaaataacctcaggttgtgaaataaaccttggtgacataatttat
gagcctccaagagatggtccaacattatgggagattggaattcctgatcgctctgctgct
gagttctatgttccagatcctaatccaaaattcataaacaagctttttattgaccatcca
gataagtttaggcaatttggcttgtgggaaagatatgcagagttatacccagatgaagat
ttgatttataccgttggtattagtgattacacaaaagattggttttatgcccaggtcacc
aggaagaaatatgatggcagttatcaaggaactacatggcaaattaagttcaacctagat
gatgtggaagcaaatagaatctataaattgcgattggctcttgcaagtgcaaatgtctct
gagttacaagttagagtaaatgatttgaaacaagatcctccactatttactacgggtgtg
attggaaaggacaatgcaatagctagacatggaattcatggactctattggctcttcaac
attgatgtgtcaagtattttgctatcccaaggagataatactatatttttaacacaagct
atggctactggccccttggctctctttcaaggaataatgtatgactatattcgtttagaa
ggccccaaatatgtttcttcccattaa
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