Trifolium pratense (red clover): 123920215
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Entry
123920215 CDS
T08949
Name
(RefSeq) ATP-dependent DNA helicase 2 subunit KU80 isoform X1
KO
K10885
ATP-dependent DNA helicase 2 subunit 2
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
123920215
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123920215
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA-PK complex
123920215
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ku
Ku_PK_bind
Ku_N
Ku_C
PHA02142
Motif
Other DBs
NCBI-GeneID:
123920215
NCBI-ProteinID:
XP_045828374
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Position
LG4:9115705..9138344
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AA seq
683 aa
AA seq
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MARNKEALLLLLDVGPSMHYVLPEVEKVCSMLVQKKLIYNKYDEVGIVLFGTEDTDNELT
TEVGGYQHVVVMKNSKVVDGDIVEALQQLPRGTSDGDFLDAVIVAMDMLIKKFGETNKGK
KRLCLITNAQCPIKDPYEGSKEEQVTTIAKQMTAHGMRMESIIIRGTLSQDANKEIIDEN
DRLLNIFSKETSTRLLYVEDPISLFGALKTRNITPVTVFKGDLELGPKLRIKVLVYKKTQ
EEKFPTLKKYSDKAPQTDKFATHEVKVDYEYKSAEDPDKVVPPDQRIKGYRYGPQIVPIS
SAEWDAVKFKPEKGVKLLGFTDSSNILRHQYMKDVYVFIAEPGNTKAVLAVSALSRAMKE
MNKVAILRCAWRQGQSNVVIGVLTPNVSDRENIPDSFYFNILPFAEDVREFQFPSLSSFP
ALCQPNKQQLESAANFIKMLDLAPDGKKEVLLPDFTPNPVLARFYHYLDLKSKHPDASVP
PLDYTLRKITEPETNLILQKESVVDSFRRSFELQGNPLKKPRRLLRDKTSDEAGKENITA
PPANLIEYKSVKVENIGDLTPVQDFEAMISRRDSPDWVLKAIKDMKNKIFGMVEDSHEGD
NYPKALECLIALRKGCILEQEPKQFNDFLKHLYNFCQEKNLQSFCEYLASKGLTLIPKTE
AIDSDVTDEEARSFLVKSESKSD
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggctcgcaacaaggaagctttgcttttgctgcttgatgtgggcccatccatgcattat
gttcttcctgaagttgagaaagtttgttccatgcttgtacagaagaagttgatttataac
aaatatgatgaagtgggaattgtcttatttggaacagaagacacggataatgaactaact
acagaagtgggtggatatcagcatgttgtggttatgaaaaattctaaagttgttgacgga
gacattgttgaggctttacaacaactgcctcgaggaacttctgatggtgattttcttgac
gctgtcattgttgccatggatatgttaataaaaaagtttggagaaactaacaaaggaaag
aaacgtctttgccttattacaaatgcacaatgtccaataaaagatccgtatgaaggatca
aaagaagagcaagttaccacgattgctaaacagatgacagctcatggtatgagaatggaa
agtataattattagaggaacacttagtcaagatgcaaacaaagaaataattgatgagaac
gaccgtcttttaaatattttttcgaaggaaacatcaacaagattgttgtatgtagaggat
ccaatttctttatttggtgccctaaaaacccgaaatataactccagttacagttttcaaa
ggggatcttgaactcggcccaaaactgaggattaaggtattggtgtacaagaaaacacaa
gaagagaaatttccaactctgaagaaatactctgataaggctcctcaaactgataaattc
gcaacacatgaagtcaaagtagattatgagtacaagagtgctgaagatccggataaagtt
gtccctccagatcaaagaattaaaggttatcggtatgggcctcaaatagttcctatttcc
tctgctgagtgggatgctgtaaagttcaaaccagaaaagggtgtgaagcttttgggattt
actgattcttctaatatattgagacaccaatacatgaaagatgtctatgtgttcatagct
gaacctggaaatacaaaagctgtgcttgcagtttctgcactatcaagggctatgaaggaa
atgaataaggtggcaattttacggtgcgcctggagacagggacaaagtaatgttgtcatt
ggggtcttgacacccaatgtatctgacagagaaaatattcctgattcattttacttcaat
attcttccttttgctgaggatgtgcgagagtttcaatttccttctttatctagttttcca
gcattgtgtcagccaaacaaacaacagctagaatctgcagctaacttcataaaaatgctt
gatcttgcaccagatgggaaaaaggaagtcttgcttcctgacttcacaccaaatccagta
ctggcgcgcttttatcattatcttgacctgaaatcaaagcatccagatgcttcggtacct
cctctcgattacacactcagaaaaattacagagcctgagactaacttgattttgcaaaaa
gaatctgtcgttgactcatttcgtaggtcttttgagctgcagggaaatcccttgaaaaag
ccaagacgtttattgcgagataagacaagtgacgaagcgggtaaagaaaacattacagca
ccgcctgccaatctcattgaatacaaatctgttaaagttgagaacatcggggatctgaca
cctgttcaagattttgaagcaatgatttcacgacgagacagtccagactgggttctaaaa
gcaatcaaggatatgaaaaataaaatatttggtatggtagaagactcccatgaaggtgat
aactatcccaaagcactggaatgtttaattgcacttcgcaagggttgcatccttgagcag
gaaccgaagcaattcaacgatttccttaaacatctttacaatttctgccaagagaaaaac
cttcagagtttctgtgaatatcttgcttctaagggactcacattgatccctaaaacagaa
gctatagacagtgatgttactgatgaagaagccagaagtttcttggtaaaatctgaatcc
aaaagtgattaa
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