Trifolium pratense (red clover): 123920218
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Entry
123920218 CDS
T08949
Name
(RefSeq) ATP-dependent RNA helicase DEAH13
KO
K14780
ATP-dependent RNA helicase DHX37/DHR1 [EC:
5.6.2.6
]
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tpra03009
]
123920218
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123920218
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
90S particles
Helicases
123920218
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DHX37_C
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
WHD_HA2
ATPase
nSTAND3
AAA_19
Motif
Other DBs
NCBI-GeneID:
123920218
NCBI-ProteinID:
XP_045828380
LinkDB
All DBs
Position
LG4:complement(9141121..9148653)
Genome browser
AA seq
1344 aa
AA seq
DB search
MEPLESSGDHVEVKSRRVRARPPDTNPLIMPTKKMKKRKGVEQERGKGRGKVQSNKKQKL
SKTQKRKLNKAEDDKNKQLLMEKAIKTLNENTLPEYAFPLLQSSCNINREETVKEKRRRA
VHLLKEGLEVPHGDDLSKKQDFPSITEPESEDEDILEESEEKDIIQPFITEREILYTTST
PLGSSQEPIHGNEVVNYESVAEPVADISTDKKPDEIKSSSPTSCSIDEIKSTKSKDMTDE
KPATNFNELSNLPNVSAQRLLTPATVVHVYRPSDVQEKRKDLPIVMMEQEIMEAINYNSS
VIVCGETGCGKTTQVPQFLYEAGYGSSKFHGRSGVIGVTQPRRVAVLATAKRVAYELGVR
LGKEVGFQVRYDKKIGDNCSIKFMTDGILLREVQNDILLRRYSVLILDEAHERSLNTDIL
IGILSRVIIQRQTIYNDQQKVILSGESISPEQMIFPLKLVLMSATLRVQDFTSGKLFQTP
PPVIEVPTRQFPVTMYFAKKTEITDYVGAAYKKILAIHKKLPSGGILVFVTGQREVEDLC
RKLRRASKEFVMKKVKGSVENGGTGVHETSSVEGININEINEAFEMPGKSSIQQTDRFSG
YDEDDNNFDENESDSYDSETESELEFNDDDDNRKDSENNSNIADVLGKEENLASLKAAFE
NLSAQAPLSSSNGKRTFSVNTEDGLDPSTFCREKIARENHNSSPGALFVLPLYAMLPAAA
QLRVFEEVKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDSTNGMETYEVKFIS
KASAAQRAGRAGRTAAGHCYRLYSSAAFNNEFPGFSPAEVEKVPVHGVVLYLKSMLIKDV
KNFPFPTPLKVASLVEAENCLRALEALDCKDDLTLLGKTMAHYPLSPRHSRMILTVIKNT
RHKHIRNSSLLLAYAVAAAAALSLPNPFVMQYEGSSKDSEMSEKSSIGDDEKNIHKIEKT
KRKKLKETSKLAREKFRIVSSDALAIAYALQCFEHSQNSVQFCEDNALHFKTMDEMSKLR
QQLLKLVFYQSDKGGLEQEYTWTHGTLEDVEHAWRISSAHYPLPLVEERLICQAICAGWA
DRVAKRIPISSRVADGGTITRAGRYQSSMVDESIFLHRWSSVSTARPEFLVYNELLETKR
PNKEGETSAKRAYMHGVTSVDPSWLVENAKSSCSFSPPLEDPRPFYDAQADEVKCWVIPT
FGRFCWQLPKHSMPISNVELRVQVFAYALLEGQVCPCLKSVRKYMSAPPESFLRRESFGQ
KRVGNLYSKLKSKLIDSSAMLRTVWKENPRELFPEILDWFQQGYRNHFEELWLQMLGEVL
HETQEQPLHKSVKRKLKGKSKSRK
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atggaacctttggaaagttctggagaccatgttgaggttaaatctcgaagggtccgagca
cggccaccggatactaatccactgattatgccaactaagaagatgaagaagaggaaaggg
gtggaacaggaacgggggaagggacgtggaaaagttcaatcaaataagaaacagaagttg
agcaaaactcagaaaaggaagctgaacaaggcagaggatgacaagaataaacaacttttg
atggaaaaagccattaagacattaaatgagaacacgcttcctgagtacgcttttcccctt
ttgcaatcatcatgcaatatcaaccgggaagagactgtgaaggaaaagcgtaggagagca
gtacatttattaaaagaaggattggaggttccacatggtgatgacctgtccaagaaacag
gattttccttctataaccgagcctgagtcagaagatgaagatattcttgaggaatctgag
gaaaaagacatcattcaaccttttataactgaaagagaaatcttatatacaacatccact
cctttggggtcttcacaagaaccaattcatggaaatgaagttgtaaattatgaatctgtt
gctgaacctgtagctgacatttctactgacaagaaacctgatgaaatcaaaagttcttct
cccacttcttgttctattgatgagataaaaagcacgaagtcaaaggacatgacagatgag
aagccggccaccaatttcaatgaattgagcaaccttccaaatgtttctgcacagaggctt
ttgactcctgctactgttgtgcatgtatataggccatcagatgttcaagagaaaagaaag
gatcttcctatagtcatgatggagcaagagataatggaagctataaattacaattccagt
gtcatcgtatgtggagaaactggatgtggtaaaacaactcaggttccccagtttctttat
gaagctggctatggttcaagcaagttccatggccgcagtggtgttattggtgtcactcaa
ccacgtagggtagctgttcttgccacagcaaagcgtgtggcgtatgagcttggtgttcgt
cttgggaaggaggttggttttcaagttagatatgacaagaaaattggagataattgttct
atcaagtttatgactgatggaattttgctacgagaagttcagaatgatattttattgagg
cgttattctgtcctaattcttgacgaggctcatgagaggagcttgaacacagacattctg
atcgggattctctcgcgtgtaattatacaacgccaaacgatttataacgatcagcagaag
gtgatcctttcaggagaaagtataagtccagaacaaatgatttttccattaaaacttgtg
ctgatgagtgccaccttgcgagtacaagattttacttctggaaagttattccaaactcct
ccaccggtgatagaagttcctacgaggcagtttccagttacgatgtattttgccaaaaaa
accgagataacagattatgtcggtgcggcatataagaagatcttggcaattcacaagaag
ttgccatctgggggcatacttgtctttgtcactggacaaagggaagtagaggacttgtgc
aggaagctgcgcagagcttcaaaggagtttgtcatgaaaaaagttaaaggatctgtggaa
aatggtggcactggggtccatgaaacaagttctgttgagggaataaatattaatgagatt
aacgaagcatttgagatgcctggaaaatcatccatccagcaaactgataggtttagcggt
tatgatgaagatgacaataattttgatgagaacgaatctgattcttatgattcagaaaca
gagagtgaattggaattcaatgatgatgatgataatcgcaaggattcagagaacaatagt
aatatcgcggatgtcttaggaaaggaagaaaatcttgcttcattgaaggccgcgtttgaa
aatttgtccgcgcaagctccattaagttcctcaaatgggaagaggacattttctgtgaat
acagaagatggtttagacccatcaacattttgcagggagaaaatagctagagaaaatcac
aattcttctccgggggcactctttgttctaccgctttatgctatgttgcctgctgcagct
caacttcgtgtatttgaagaagtcaaggaaggagagaggcttgttgttgttgctacaaat
gttgcggaaacatctttaacaattccagggataaagtatgtggttgatactggaagggaa
aaggtgaagaattatgattccactaatggcatggagacatatgaagtgaaatttataagt
aaggcatctgctgctcaacgagcaggcagagctggaagaactgctgcaggacactgttat
cgtctctattcttctgcagcttttaataatgagtttcctgggttctctcctgctgaagtt
gagaaagtgcctgttcatggtgttgtcctttacttgaaatccatgcttattaaggatgtt
aaaaacttcccgtttcctactcctcttaaggttgcttccctggttgaagctgagaattgc
ttgagagctcttgaagcacttgattgtaaagatgaccttacacttttgggaaaaaccatg
gcacattatcctttgagtcctcgtcattctagaatgatccttactgttataaaaaataca
aggcacaagcatattcgtaattcaagtctgcttttggcatatgctgttgcagctgctgct
gctttgagtttgccaaatccttttgtaatgcaatatgaaggaagcagcaaagattcagaa
atgtctgagaaatctagcattggagacgatgagaaaaatattcataaaatagaaaagacg
aagagaaagaaactaaaagaaacctctaaacttgctcgtgaaaaatttcgaattgtcagc
agtgatgccctagccatagcatatgccttgcagtgtttcgaacattcacagaattcggta
caattctgtgaagacaatgcattgcatttcaaaaccatggatgaaatgtccaaacttaga
cagcaactactcaaattggtcttttatcagagtgataagggtggtttagaacaagagtac
acatggactcatggaactctagaggacgtggaacatgcttggcgaatttcttctgcgcac
tatcctctccctctggttgaggaaaggctcatttgtcaagcaatatgtgctggttgggcc
gatagggttgctaaacgtattccaatttcttctagggtcgctgatggagggacaattact
cgtgctggtaggtatcaatcatccatggtcgatgaaagtattttccttcatcgttggtca
tcggtttctactgcacgccctgagtttctggtttacaatgaactattagagacaaaaaga
ccaaacaaagaaggggagacgagtgcgaaaagagcatacatgcatggagtaacgagtgtg
gatccatcttggctagttgagaatgccaagtcttcatgcagcttctctccacccttggaa
gatcccagaccattttatgatgcgcaggctgatgaagtaaaatgttgggttatcccaacc
tttggacgtttctgttggcagcttccaaagcattcaatgcccattagcaacgttgagctt
cgggtgcaggtgtttgcctatgctttacttgaaggtcaggtgtgtccgtgtttaaaatct
gttcggaaatacatgtcagcccctcctgaaagttttttgaggagagaatcttttggtcaa
aaaagggtaggaaatctttatagtaagttaaaaagcaagttgatcgatagctctgccatg
ttaagaacggtgtggaaggagaatccaagagaattatttccagaaattttggattggttt
cagcaaggttatcgcaatcactttgaagagctatggttacaaatgctcggtgaagtgcta
catgagacacaagaacaacctctgcataaaagtgtcaaaagaaagttgaaaggaaaatct
aaatcgcggaaatga
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