Trifolium pratense (red clover): 123920558
Help
Entry
123920558 CDS
T08949
Name
(RefSeq) heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic-like
KO
K13789
geranylgeranyl diphosphate synthase, type II [EC:
2.5.1.1
2.5.1.10
2.5.1.29
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00900
Terpenoid backbone biosynthesis
tpra01100
Metabolic pathways
tpra01110
Biosynthesis of secondary metabolites
Module
tpra_M00366
C10-C20 isoprenoid biosynthesis, plants
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09109 Metabolism of terpenoids and polyketides
00900 Terpenoid backbone biosynthesis
123920558
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
tpra01006
]
123920558
Enzymes [BR:
tpra01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.1 dimethylallyltranstransferase
123920558
2.5.1.10 (2E,6E)-farnesyl diphosphate synthase
123920558
2.5.1.29 geranylgeranyl diphosphate synthase
123920558
Prenyltransferases [BR:
tpra01006
]
Terpene biosynthesis
Prenyl diphosphate synthase
123920558
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
polyprenyl_synt
Motif
Other DBs
NCBI-GeneID:
123920558
NCBI-ProteinID:
XP_045828792
LinkDB
All DBs
Position
LG4:complement(394670..396192)
Genome browser
AA seq
340 aa
AA seq
DB search
MDIRTSNLTNVKSTVHFSCISNQHRSHLTTKPKPTTVKMSSMTKTHNPHPYWASLHADIE
AHLKHSLTIKEPLVVFEPMHHYIFTAPKTTVPALCLAACELVGGQRHHAISAASALLLME
SATYTHEHLPLTDRSGPKPGPVINHVYGPNVELLTSDGIAPFGFELIARSDGGENSERIL
RVMVEISRAVGSGGVIEAQYRKALDGGSVGEEMCHVEEIRRVVEKYEGGLHACGAVCGGV
LGGGCEEEIERLRKFGFYVGIIQGMIKRGFKEDKEVDEARNLALEELQFFKDKEEGNACT
DCLVKMGASSNLSLVILDTPPIELYLSLLADAQGVAFVRE
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggatattagaacttccaacctcaccaatgtcaaatccaccgttcatttttcatgcata
tcgaatcaacaccgttcccacttaaccacaaagcccaagcccaccaccgtcaaaatgagt
agtatgactaaaactcataacccacatccttattgggcttctttgcatgccgacatagaa
gcccatctcaaacattctcttacgatcaaagaaccactcgtggtttttgagcccatgcat
cattatattttcaccgccccaaaaaccaccgtgccggctttatgcctcgccgcatgtgag
ctcgtcggaggtcaacgccaccatgccatatccgccgcttcagctttgttactaatggag
tcagctacttacacccatgagcatcttccactcacggacaggtccgggcccaagcccggg
cccgtgatcaatcatgtttatgggcctaacgtggagcttctgacaagtgatggaattgct
ccgtttggatttgaattgatagctagatcggacggtggagaaaattcggagcggattttg
cgggtgatggttgagatctcacgggctgtgggttcaggaggggtgatagaggcgcagtac
aggaaagctttggatggtggatctgtcggtgaggagatgtgccacgtggaagaaatcagg
cgtgttgtggagaaatatgaaggtgggttgcatgcgtgtggtgctgtatgtggaggtgtg
ttgggaggggggtgtgaagaggaaattgagagattaaggaaatttgggttttatgttggg
attattcaaggaatgataaaaagggggtttaaggaagataaagaagtggatgaggcaaga
aatttggcacttgaggaattgcaattttttaaggataaagaggaggggaatgcctgtacg
gattgtttggtcaagatgggagcttcatcaaacttgtcgcttgtgattcttgatacaccc
ccgattgagttatacttgtccctccttgctgatgctcaaggagtagcttttgttagggag
taa
DBGET
integrated database retrieval system
