Trifolium pratense (red clover): 123920626
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Entry
123920626 CDS
T08949
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123920626
Membrane trafficking [BR:
tpra04131
]
Protein recycling
Others
EARP complex
123920626
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Gene cluster
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
EXOC6_Sec15_N
Sec8_N
TetR_C_30
Motif
Other DBs
NCBI-GeneID:
123920626
NCBI-ProteinID:
XP_045828874
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Position
LG4:16385306..16403407
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AA seq
1123 aa
AA seq
DB search
MQPNLFPFGTALSNPFIFNGDLSEGGGIDSSRVFVLLPFFLLSQGGAMDLSKVGEKILSS
VKSARSIGLLPPVSDRPEVPARAAAAAAVARALAGLPPHQRYSFSSSSEELSSIYGSRPH
GPIVDELEDEFYEEDFDPIRHVLEHVSSEENELLYFEKQASLRLTQLDKVAERLSRHVME
HHEVMVKGMNLVRELEKDLRIANVICMNGRRHLTSSMNEVSRDLIVNSYSKKKHALMEML
PVLNELRRASEMQSTLESLVEEGNYWKAFQVLSEYLQLLDSLSELSAMQEMSRGVEVWLG
RTLQKLDALLLDVCQEFKEDDYMTVIDAYALIGDTTGLAEKIQSFFMQEVISETHSVLKA
IVHEDDEGLAQNSRLTYSDLCLQIPDSKFRQCLLRTLAVLFDLICSYHEIMDFQLESKDS
AAQTSDKGNEDISCSSGEAREVDSDVRVCNNSMSSSGDVIHGSSSRKESSAISSLTEIAG
SPYSDSHDPVNEARKEESSASSIDSPWYHLRKEATTFVSQTLQRGRKNLWHLTASRVSVL
LSSAAACSASIHQFLKNYEDLRVFILTGEAFCGMEVAEFRQKLKVVCENYYIAFHRQNVH
ALKMVLEKETWLKLPPETVQIISFAGLIGDGAPLISLSNSKSMNVNAIHSNNKSVNMVQT
GARKSGFSHWIKNGNPFLQKLSTSKDGHGNSQHNGSSYGEFDGGSANNYHDDRDTPRKNN
SSQSNGANSISEEENEDLLADFIDEDSQLPSRSTKSHHSRSHSSHGNDEESTTQTGSSLC
LLRSMDKYARLMQKLEVVNVEFFKGICQLFEIFFYFIYETFGQQNTNSSGKSSANSLNYR
LRTALSRINQESEEWLKPHSASPTSLSSSFVHGEVTPTNPPNMNAGHPSSTAFSLKERCV
AVDTISLVARILNRAKAHLQSMLLQSNSTVLEDFYVHLVDAVPDLIEHVHHTTVRLLLHI
NGYVERVANCKWEVKELGMEHNGYVDLLLGEFKHFKTRLAHGGIRKETQDILLDYGLDII
AETLVEGLSRVKRCNDEGRALMSLDLQVLINGLKHFASLNVKSKLQMVEAFIKAYYLPET
EYVHWARAHPEYTKSQVVGLVNLVASMKSWKRKTRLEILEKIE
NT seq
3372 nt
NT seq
+upstream
nt +downstream
nt
atgcagccgaatttgttcccctttggaaccgcgttgagtaatccatttattttcaatggt
gatttgagtgaaggaggtggaatcgatagttctagggttttcgttttgcttcctttcttc
ttgctctctcaaggaggagcaatggatttgtcgaaagtcggtgagaagatcttgagttct
gttaagtccgctagatcgattggattgcttcctcctgtttctgatcggcctgaggttcca
gctcgggctgctgctgcagctgctgtagctcgtgctcttgcagggttacctcctcatcag
aggtatagtttttcatcaagttcagaagagctgagttcaatatatggaagcagacctcat
ggccctatagtggacgaactggaggatgaattctacgaggaggattttgatccgattagg
catgttttagagcacgtttcatctgaagaaaatgagctattatattttgaaaagcaggct
tcccttagattaacacaactggataaagtagcagagcgtttgtctcgccatgttatggag
catcatgaagtaatggtgaaggggatgaatttggtcagggaattggagaaagacttaaga
attgcaaatgtcatctgtatgaatggtagaagacacctgacatcttctatgaatgaggtt
tcaagggatttgattgtgaattcttattcaaaaaagaaacatgctctaatggaaatgctt
ccagtcttgaatgaacttcgacgtgcatcagagatgcaatcaacacttgaatctcttgta
gaggaagggaattattggaaggcatttcaagtcctatcggagtatttgcaactattagat
agtttgtcagagctttctgcaatgcaagagatgagccgtggtgtggaggtttggctggga
agaactttgcagaagttggatgctcttctattggatgtatgtcaggaatttaaggaagat
gactatatgacagtaattgatgcgtatgcattgataggggataccactggtcttgctgaa
aagatacaaagtttcttcatgcaagaagtcatatcagagacgcactcggtgctaaaggct
attgtgcatgaggatgacgagggacttgcacaaaatagtaggctcacttacagcgatcta
tgccttcagatacctgattctaagtttaggcagtgcttactaagaacattggctgtgcta
tttgacctcatatgttcataccatgaaattatggattttcagctagagagtaaggactca
gcagcacaaacttctgataagggcaatgaagacatttcttgtagttcaggtgaggctcgg
gaagttgattcagatgtaagagtttgcaacaattccatgtccagttctggggatgtgata
cacggctcatcttctagaaaggaatcttcagcaatcagctcactgactgaaattgctggt
tcaccatacagtgattctcatgatccagtgaatgaggctagaaaggaggaaagttcagcg
tcaagcatcgattccccatggtaccatcttcggaaagaagctacaacatttgtttctcag
acccttcaaagagggcgcaagaatctgtggcatctcactgcaagccgtgtctcagtgttg
ctttcttctgctgcagcttgttctgctagcattcatcaattcttgaaaaactatgaagat
ctgagggtattcattttgactggggaagccttctgtggtatggaagtggctgagttcagg
cagaagttgaaggttgtttgtgaaaactattacatagcttttcatcgacaaaatgtgcat
gcactaaaaatggtgttggagaaggagacttggttaaaattacctccagagactgttcaa
attatcagttttgctggacttattggtgatggagcaccattgatttctttatctaacagt
aaatcaatgaatgtcaatgcgattcattccaataataaatcagtgaacatggttcagact
ggtgcgaggaagagtgggttctctcattggattaaaaacggaaatccttttctgcaaaaa
ctatcaacctccaaagatggtcatggtaattcccaacataatgggtcaagttatggtgaa
tttgatggaggctcagccaacaactatcatgatgatagagacacccctagaaagaataac
tccagtcaatcgaatggtgccaattctatttcagaagaggaaaatgaggatcttcttgct
gactttattgatgaagacagtcaacttccaagtcgaagtactaaatcccatcattcaaga
tctcactcttcacatggtaatgatgaagagagtacaacccaaactggttcttctctatgt
ctcttaaggtctatggacaagtatgcaaggcttatgcagaaattagaagtagtaaatgtt
gagttctttaagggaatatgccagttgtttgaaatttttttctattttatatatgaaaca
tttggtcagcagaatactaattcaagtggaaaaagctcagctaactctcttaattatcgc
ttgaggacagccttatctagaataaaccaagaaagcgaagagtggcttaagcctcactca
gcttcaccaacatctttaagttcatcatttgtacatggagaggtgacacctacaaatcct
ccaaatatgaatgctggtcacccctcgtcaacagcttttagtcttaaggaaaggtgcgtg
gctgttgacactatatctcttgtcgctcgaattctgaatagagccaaagctcatctccaa
tcaatgctcttgcaaagtaattcaactgtacttgaggatttctatgttcatctggtggat
gctgtaccagatcttatagagcacgtgcatcatacaacagtaagactactgctgcacatt
aatgggtatgttgaacgcgttgccaattgtaaatgggaagtaaaagaacttgggatggag
cataatgggtatgttgatttgctgctgggggagtttaagcactttaaaacacgactcgct
catggaggaattcgtaaagagactcaagacatattgttggactacgggcttgacattatt
gcggaaactcttgtggaaggactttcacgggtgaagagatgtaatgatgaaggacgagcg
ctaatgtcattggatctgcaggttttgataaatgggctaaagcattttgcgtcgttgaat
gtgaagtccaagctacaaatggtcgaagctttcattaaggcttactaccttccggagaca
gaatatgtgcactgggcacgtgcgcacccggaatacactaaaagccaggttgttggattg
gtcaatcttgttgcctctatgaaaagttggaagaggaaaaccaggttggaaatactggaa
aagatcgagtaa
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integrated database retrieval system
