Trifolium pratense (red clover): 123921157
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Entry
123921157 CDS
T08949
Name
(RefSeq) cell division control protein 48 homolog E-like
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123921157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123921157
03009 Ribosome biogenesis [BR:
tpra03009
]
123921157
04131 Membrane trafficking [BR:
tpra04131
]
123921157
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpra04147
]
123921157
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
123921157
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
123921157
Membrane trafficking [BR:
tpra04131
]
SNARE
SNARE associated proteins
Others
123921157
Autophagy
Aggrephagy
Other aggrephagy associated proteins
123921157
Exosome [BR:
tpra04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
123921157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_33
AAA_5
AAA_2
AAA_22
AAA_14
CDC48_2
TIP49
NPHP3_N
RNA_helicase
nSTAND3
Mg_chelatase
AAA_17
ATPase_2
AAA_28
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
Vps4_C
AAA_7
NB-ARC
Viral_helicase1
AAA_24
AAA_lid_PRS2_C
NACHT
TsaE
Zeta_toxin
DUF815
Zot
Motif
Other DBs
NCBI-GeneID:
123921157
NCBI-ProteinID:
XP_045829531
LinkDB
All DBs
Position
LG4:complement(19911965..19914557)
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AA seq
808 aa
AA seq
DB search
MANQPESSDSNGTKRDFSTAILERKKAPNRLVVDESINDDNSVVALHPDTMQRLSLFRGD
TILIKGKKRKDTICITLADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGNRVH
ILPVDDTIEGVTGNLFDAYLKPYFFEAYRPVRKGDMFLVRGGMRSVEFKVIECDPAEYCV
VAPDTEIFCEGDPVKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKRDKTNGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVVRIHTKNMKLSEDVDLEKIAKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFSTALGSSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSSGDAGGA
AERVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHNI
FKAALRKSPIAKDVDIKALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEN
PEAMEEDNEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAH
SGAGGNAASASADPFASAGGADEDDLYS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggctaaccaacccgagtcctccgattccaacggaacgaaaagagacttcagtactgct
attctcgagcggaagaaggctccgaatcgtctcgtcgtcgatgagtccatcaacgatgac
aactccgtcgtcgcacttcatcctgataccatgcagagactttcactctttcgcggtgat
actattctgatcaagggaaagaaaagaaaagacacaatttgtattacacttgctgatgat
acatgtgaggaaccaaagataagaatgaataaggttgttagaaacaatcttagggttaga
cttggagatgttgtttctgttcatcaatgtcctgatgtcaaatatggaaatcgagttcac
attcttccagtggatgatactattgaaggagttactgggaatctcttcgatgcttactta
aaaccttatttctttgaggcatatcgtccagttaggaagggtgatatgttccttgttaga
ggtgggatgagaagtgtggaattcaaggttattgaatgcgaccctgctgagtattgtgtg
gttgcacctgatactgagatcttctgtgaaggagatcctgttaaaagggaagatgaggat
aggttagatgaggttggttatgacgatgtgggcggggttagaaagcagatggctcaaatt
cgggaactggtggaactgccattgaggcatccacaattattcaagtctattggtgtgaag
ccaccaaaaggtattctgttgtatggaccccctggatctgggaagactttaattgcacga
gctgttgcaaatgaaacaggtgctttctttttctgcatcaatggtcctgagatcatgtca
aagctggctggtgagagtgaaagtaatttgaggaaggcatttgaagaagctgagaagaat
gcgccttcaataatcttcatcgatgaaatagactccattgctccaaagcgggacaaaact
aatggtgaagttgagagacgaattgtttcccagctcttgaccctcatggatgggcttaaa
tcccgtgcacatgttattgttattggagcaacaaatcgtcccaatagcattgatcctgct
cttcgtaggtttggaaggtttgatcgggagatagatattggtgtaccagacgaagttgga
cgtcttgaggttgttcgtatccatacaaaaaatatgaagctttcagaagatgttgattta
gaaaagattgccaaggaaacccacggttatgttggtgctgatttagctgctttgtgtact
gaagctgcacttcagtgcatcagagagaaaatggatgtgattgacctagaagatgaaacc
attgatgctgagatattgaactcaatggcagtcacaaatgaacatttctccactgcactt
ggatcaagcaatccttctgctctccgtgaaacagttgttgaagtgcccaatgtcagctgg
gaagatattggtggtcttgaaaatgttaagcgagaactacaagagactgttcaatatcca
gtggaacatcctgagaaattcgagaagtttggaatgtcaccttcaaagggagttctattc
tacggtcctcctggttgtggtaaaacccttttggccaaagctatcgccaatgaatgtcaa
gcaaacttcattagtatcaaaggtcctgagctactcactatgtggtttggagaaagtgag
gctaatgtgagagaaatttttgacaaagctcgtggttctgctccatgtgtcctattcttt
gatgaacttgattctatagcaactcagagaggtagtagttcaggagatgctggtggtgct
gctgaaagagttttgaatcaactgcttacagaaatggatggaatgtcagcgaagaaaact
gtgttcattatcggggcaactaaccgaccagatatcatagaccctgctctactacgacct
ggacgtctggaccagttgatctatatcccccttccagatgaggattctcgccataatata
ttcaaagctgccttgagaaaatcccccatcgcaaaggatgttgacatcaaagctcttgca
aagtacactcaaggcttcagtggtgctgatattactgagatttgccagcgtgcatgcaag
tacgctataagggagaacattgagaaggatattgagagagaaagaaggagaagcgaaaat
cctgaggctatggaagaggataatgaagatgaggtagctgaaatcaaagctgcacatttt
gaagaatcaatgaagtacgcacgaaggagtgtcagtgatgctgacattcgcaaataccaa
gcttttgcccaaacattgcagcaatcaagagggtttggaagcgagttcaggtttgcacac
tctggtgccggcggaaatgctgcttctgcttcagctgacccttttgcaagtgctggggga
gctgacgaggacgacctctacagttag
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