KEGG   Trifolium pratense (red clover): 123921157
Entry
123921157         CDS       T08949                                 
Name
(RefSeq) cell division control protein 48 homolog E-like
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    123921157
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpra03019]
    123921157
   03009 Ribosome biogenesis [BR:tpra03009]
    123921157
   04131 Membrane trafficking [BR:tpra04131]
    123921157
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:tpra04147]
    123921157
Messenger RNA biogenesis [BR:tpra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     123921157
Ribosome biogenesis [BR:tpra03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    123921157
Membrane trafficking [BR:tpra04131]
 SNARE
  SNARE associated proteins
   Others
    123921157
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    123921157
Exosome [BR:tpra04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   123921157
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 AAA_33 AAA_5 AAA_2 AAA_22 AAA_14 CDC48_2 TIP49 NPHP3_N RNA_helicase nSTAND3 Mg_chelatase AAA_17 ATPase_2 AAA_28 AAA_18 Parvo_NS1 IstB_IS21 ABC_tran Vps4_C AAA_7 NB-ARC Viral_helicase1 AAA_24 AAA_lid_PRS2_C NACHT TsaE Zeta_toxin DUF815 Zot
Other DBs
NCBI-GeneID: 123921157
NCBI-ProteinID: XP_045829531
LinkDB
Position
LG4:complement(19911965..19914557)
AA seq 808 aa
MANQPESSDSNGTKRDFSTAILERKKAPNRLVVDESINDDNSVVALHPDTMQRLSLFRGD
TILIKGKKRKDTICITLADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGNRVH
ILPVDDTIEGVTGNLFDAYLKPYFFEAYRPVRKGDMFLVRGGMRSVEFKVIECDPAEYCV
VAPDTEIFCEGDPVKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKRDKTNGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVVRIHTKNMKLSEDVDLEKIAKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFSTALGSSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSSGDAGGA
AERVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHNI
FKAALRKSPIAKDVDIKALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEN
PEAMEEDNEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAH
SGAGGNAASASADPFASAGGADEDDLYS
NT seq 2427 nt   +upstreamnt  +downstreamnt
atggctaaccaacccgagtcctccgattccaacggaacgaaaagagacttcagtactgct
attctcgagcggaagaaggctccgaatcgtctcgtcgtcgatgagtccatcaacgatgac
aactccgtcgtcgcacttcatcctgataccatgcagagactttcactctttcgcggtgat
actattctgatcaagggaaagaaaagaaaagacacaatttgtattacacttgctgatgat
acatgtgaggaaccaaagataagaatgaataaggttgttagaaacaatcttagggttaga
cttggagatgttgtttctgttcatcaatgtcctgatgtcaaatatggaaatcgagttcac
attcttccagtggatgatactattgaaggagttactgggaatctcttcgatgcttactta
aaaccttatttctttgaggcatatcgtccagttaggaagggtgatatgttccttgttaga
ggtgggatgagaagtgtggaattcaaggttattgaatgcgaccctgctgagtattgtgtg
gttgcacctgatactgagatcttctgtgaaggagatcctgttaaaagggaagatgaggat
aggttagatgaggttggttatgacgatgtgggcggggttagaaagcagatggctcaaatt
cgggaactggtggaactgccattgaggcatccacaattattcaagtctattggtgtgaag
ccaccaaaaggtattctgttgtatggaccccctggatctgggaagactttaattgcacga
gctgttgcaaatgaaacaggtgctttctttttctgcatcaatggtcctgagatcatgtca
aagctggctggtgagagtgaaagtaatttgaggaaggcatttgaagaagctgagaagaat
gcgccttcaataatcttcatcgatgaaatagactccattgctccaaagcgggacaaaact
aatggtgaagttgagagacgaattgtttcccagctcttgaccctcatggatgggcttaaa
tcccgtgcacatgttattgttattggagcaacaaatcgtcccaatagcattgatcctgct
cttcgtaggtttggaaggtttgatcgggagatagatattggtgtaccagacgaagttgga
cgtcttgaggttgttcgtatccatacaaaaaatatgaagctttcagaagatgttgattta
gaaaagattgccaaggaaacccacggttatgttggtgctgatttagctgctttgtgtact
gaagctgcacttcagtgcatcagagagaaaatggatgtgattgacctagaagatgaaacc
attgatgctgagatattgaactcaatggcagtcacaaatgaacatttctccactgcactt
ggatcaagcaatccttctgctctccgtgaaacagttgttgaagtgcccaatgtcagctgg
gaagatattggtggtcttgaaaatgttaagcgagaactacaagagactgttcaatatcca
gtggaacatcctgagaaattcgagaagtttggaatgtcaccttcaaagggagttctattc
tacggtcctcctggttgtggtaaaacccttttggccaaagctatcgccaatgaatgtcaa
gcaaacttcattagtatcaaaggtcctgagctactcactatgtggtttggagaaagtgag
gctaatgtgagagaaatttttgacaaagctcgtggttctgctccatgtgtcctattcttt
gatgaacttgattctatagcaactcagagaggtagtagttcaggagatgctggtggtgct
gctgaaagagttttgaatcaactgcttacagaaatggatggaatgtcagcgaagaaaact
gtgttcattatcggggcaactaaccgaccagatatcatagaccctgctctactacgacct
ggacgtctggaccagttgatctatatcccccttccagatgaggattctcgccataatata
ttcaaagctgccttgagaaaatcccccatcgcaaaggatgttgacatcaaagctcttgca
aagtacactcaaggcttcagtggtgctgatattactgagatttgccagcgtgcatgcaag
tacgctataagggagaacattgagaaggatattgagagagaaagaaggagaagcgaaaat
cctgaggctatggaagaggataatgaagatgaggtagctgaaatcaaagctgcacatttt
gaagaatcaatgaagtacgcacgaaggagtgtcagtgatgctgacattcgcaaataccaa
gcttttgcccaaacattgcagcaatcaagagggtttggaagcgagttcaggtttgcacac
tctggtgccggcggaaatgctgcttctgcttcagctgacccttttgcaagtgctggggga
gctgacgaggacgacctctacagttag

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