Trifolium pratense (red clover): 123921252
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Entry
123921252 CDS
T08949
Name
(RefSeq) putative cyclic nucleotide-gated ion channel 8 isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
123921252
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tpra04040
]
123921252
Ion channels [BR:
tpra04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
123921252
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Ion_trans_2
IQ_SCN5A_C
Motif
Other DBs
NCBI-GeneID:
123921252
NCBI-ProteinID:
XP_045829672
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Position
LG4:complement(60275219..60279611)
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AA seq
746 aa
AA seq
DB search
MFDSGYKSQYIGGQKEKFVRLDDLDANLTTPSSSRGMKKLRFNLDSLPIPFRGRGRKNTS
KSFRVGVRKGSDGLKNIGRSLKSGVTTWAVFPEDLKVSQKKVFDPQDKNLLYWNKFFEIL
CILSIACDPFFFYLPYFNHKSYCLAMDNHLAKYIVTLRTICDCIYLIRISFQFRTAFIAP
SSRVFGRGELVIDPGLIAKRYLRRYFVFDFWSVLPLPQIVVWKYLYSSRRMEVLDTKTSL
LRHVIMQYLPRFVRFIPLASEVKKTAGVFSENALLGAMYYLIWYMLASHISGSVWYLLSI
ERNDTCWTNACKAVEGCNTHFLYCGSSSKHIRGYESWRNVSEKVLKSKCFVDDGNSPFNY
GIFSQAIESGICSSIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLV
LFSLLIGNMQTYLNSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRG
VDEESLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEKTYIV
REGDPVDEMLFIIRGRLDSVTTDGGRSGFFNRGILKEGDFCGEELLTWALDPKSAANLPS
STRTVKAMSEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWR
KYLRRKRRKEEEEEYYESDYPGSDDPSQALVPRTESSSKFGFNTTIYASRFAANLRGHRH
RVPSSNDLMNIPKPPEPDFSALDNEE
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atgtttgattctggttacaagtcacagtatattggaggtcagaaagagaaatttgtgagg
ttggacgatttggatgcgaatttgactacgccatctagctcaagagggatgaagaaatta
agatttaatttagattctttgcctattccttttcgtggtcgcggaagaaaaaacacatca
aaatcgtttcgtgtaggagtgagaaagggatcagatggactaaaaaatattggaagatca
ctcaaaagtggagtcactacttgggcagtgtttccagaagatcttaaagtgtcacagaaa
aaagtatttgatcctcaagataagaatcttctgtactggaacaaatttttcgagattctt
tgcattctttctatagcttgtgatcctttctttttttatcttccttatttcaaccacaaa
tcatattgtttagccatggataaccacctagcaaagtatattgttacattgagaacaata
tgtgattgcatttatctcatccggataagtttccaattccgcaccgccttcattgcgcct
tcatctcgagtatttggaagaggtgaacttgtcatagatcctggattgatcgcgaagcga
tatttacgacgctacttcgtttttgatttctggtctgtactgccattgccacagattgta
gtgtggaaatatctttatagttcaagacgtatggaagtattggatacaaaaacatcacta
ttgagacatgttataatgcaatatttaccgagatttgtacgctttatacctttggcttca
gaagttaaaaaaacagctggtgttttttcggaaaatgcattgcttggtgccatgtactat
ttgatatggtatatgcttgctagccatatatcaggttctgtctggtacttattatccata
gaacggaacgacacgtgctggacgaatgcatgtaaagcagttgaagggtgtaatacacat
tttttgtattgtggaagttcaagtaagcatatacgaggatatgaaagttggagaaatgtc
agtgaaaaggttcttaaaagtaaatgctttgttgatgatggtaactcaccttttaattat
ggaatcttctctcaagctattgagtctggtatttgttcttccatagaagtctttcccaaa
ttttgttactgtctatggtggggccttcaaaatttgagtacacttggtcaggggcttcta
actagtacctaccctggagaggttatgttttccatagtaatagctattatggggcttgtg
cttttttctcttttgattggaaacatgcagacctaccttaattcaatgtcggttcgtctg
gaggaaatgaggatcaaaaggcgtgactccgagcagtggatgcatcatcgcttgcttcct
ccggagctaagggaaagagtcagacgttacgaccaatacaagtggctgaacacccgaggg
gtcgatgaagaaagcttggttcagaatcttccaaaagatctcagaagagatatcaaacgc
catctttgtttgaatttggtcagaagggttcctctctttgctaacatggacgaacgcttg
cttgatgcgatatgcgagcgattgaaaccaagtttatatacagagaaaacttacatagtt
agggaaggtgatccagttgatgagatgttgttcatcattcgtggtcgtctagatagtgtt
actacagatggtggaagaagcggctttttcaacagaggaattttgaaggaaggtgatttc
tgtggtgaagagttgctaacatgggcattggatccaaaatctgctgctaacttgccatca
tcaacaagaacagtgaaagctatgagtgaggtagaggcatttgctttagaagcagaggaa
ttaaagtttgttgcatcacagtttagacacatacatagcagacaggttcagcatacgttc
cgattctactcgcaacaatggagaacatgggctgctatctacattcaagctgcatggagg
aagtatttaaggagaaaacgcagaaaggaggaggaagaagaatattatgaatctgattat
ccgggaagtgatgatccttcacaggctttggttccgcgtactgaaagttcgtcaaaattt
ggatttaatacaacaatctatgcttctcggtttgctgctaatcttcgtggtcatagacat
cgagttccaagttcaaacgacctgatgaacattccaaagcccccagaacctgacttcagt
gctcttgataatgaagagtga
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