Trifolium pratense (red clover): 123921267
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Entry
123921267 CDS
T08949
Name
(RefSeq) protein argonaute PNH1-like
KO
K11593
eukaryotic translation initiation factor 2C
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123921267
03036 Chromosome and associated proteins [BR:
tpra03036
]
123921267
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
123921267
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
123921267
RNA interference (RNAi) pathway
RITS (RNA-induced transcriptional silencing) complex
123921267
microRNA pathway
RISC loading complex
123921267
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piwi
PAZ
ArgoN
ArgoL1
ArgoL2
ArgoMid
Motif
Other DBs
NCBI-GeneID:
123921267
NCBI-ProteinID:
XP_045829694
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Position
LG4:complement(43128644..43138895)
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AA seq
883 aa
AA seq
DB search
MEEQDKLQETGLESQLASCFSSSSSKSLVFPSRPGYGKLGTKCVVKANHFLADISVSDLS
HYQVTITPEVFFRKKRKAIIVELVRLHRNTELGRKLPVYDGGRNLYTAGSLPFTHKEFNI
VVVNEDDEGASSSTREREFEVEIKFVAHVSMHQLHELLSGKKVDTPHEALKVISIVLKEL
ASHSYVSFGRLLYSPDLRKSHNLSGGLELWHGFYQSIKPTQMGLSLNVDLSSSAFIEPLP
VIDIVAQILEKDVYSKPISDADRVKIKKALRGVKVEVTYRGSFRRKYRITGVTSQPTREL
FFPLDEKMNMKSVVDYFQEMYGYTIMYPHLPCIQVGEKKANYLPMEACKIVEGQRCTKGL
NDKQITSLLKVSCLRPREREKDILQTIHQNDYDCNPYAKEFGIKVDKKLASVEARVLPAP
WLKYHDTGRDSKILPQCGQWNMANKKVINGSKVRYWACINFSRNVQQRTANAFCQQLVQA
CQSLGMEFSHEPVIPVYSARPDMVKKALKYVHSTSLNKLDGKELEFLIAILPDNNGSLYG
DLKKICETDLGLISQCCLTKYVFKINRHYLSNVALKINVKMGGRNTVLLDALSCRIPLVS
DIPTIIFGADVSHPEAGEDVCPSLAAVVASQDWPEVTKYAGLVCAQPHRVELIHDLFKCW
NDPHHGIVYGGMIRELLLSFQKATGKKPLRIIFYRDGVSEGQFYQVLLFELDAIRKACAS
LEPGYQPPVTFVVVQKGHHTRLFPNNHNDRNSTDRSGNILPGTVVDSKICHPTEFDFYLC
SHAGIQGTSKPAHYSVIWDDNNFSADEIQSLTNNLCYTYARCTRSVSVVPPVYYAHLAAY
RARFYMEPDVHENVKSEVTRSKVESVRPLPALKEKVKKVMFYC
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggaggaacaagataaactccaagaaactggacttgaatctcaactggcttcatgtttt
tcttcttcctctagcaaaagtcttgtgtttccttctagacctggctatggaaaacttggg
acaaagtgtgttgtcaaagctaatcacttccttgcagatatatcagtatctgacttgagc
cattaccaagttactataactcctgaagtattttttcgaaaaaaaagaaaagctatcata
gtagagttagtgaggcttcatcggaacactgagttgggaaggaagcttcctgtttatgat
ggcggaaggaatctttacactgccggttcgcttccttttacacacaaggagttcaatata
gtagtagtgaatgaggatgatgaaggtgctagcagcagtacaagggaaagagaatttgaa
gttgaaatcaagtttgtagctcatgttagcatgcatcagttacatgagcttctaagtgga
aaaaaagtggatactccacatgaagctcttaaggtcattagcattgtattaaaggagctt
gcatctcatagctatgtatcatttgggaggttactttattctccggatttaagaaaatcg
cataatctgagtggtggcttggaattgtggcacggtttctaccaaagtataaagcctact
cagatgggattatcgcttaacgttgacttgtcatcatctgcgtttatagaaccgctccct
gtgatcgacattgtagctcaaatcttagaaaaagatgtgtactcaaagccaatttcagat
gcagatcgcgtcaagattaagaaagccttaagaggtgtgaaagtagaagttacatataga
ggaagttttagaaggaagtacaggataacaggagtaacatcacagcctacaagggaactc
tttttccctctggatgagaaaatgaacatgaaatcagtagttgattactttcaagaaatg
tatggatatacaatcatgtatcctcatttaccttgcattcaagtaggcgaaaagaaggcg
aactatttgcctatggaggcatgcaagatagttgaaggtcagagatgtacaaaagggctt
aatgataagcagataacttctttgctaaaagtttcatgcctaaggccacgtgaaagggag
aaagatattctccagacaattcatcaaaatgattatgattgcaatccttatgcaaaggag
tttggtatcaaagtagacaaaaagcttgcatcagtcgaggctcgagttcttcctgctcca
tggttgaaatatcatgacactggaagagattcaaaaatcttgccacaatgtggtcagtgg
aacatggcaaacaagaaagttataaatggaagcaaagtaagatattgggcatgtatcaat
ttctcaagaaatgtccaacaaagaacagctaatgcattttgccaacagttagttcaggcg
tgccaatctttaggcatggaatttagtcatgaacctgtgattcctgtgtattcagcaaga
ccagatatggttaagaaggccttgaagtatgtacattctacttctctaaacaaacttgat
gggaaagagctagagtttctcatcgcgattcttccagacaacaatggctctctctatggc
gatctcaaaaaaatctgcgaaacggatttagggctgatttctcaatgctgtcttacaaaa
tatgtattcaagattaatagacattatttatcaaatgtagcactgaagatcaatgtcaag
atgggaggaaggaacacagtacttttggatgctctaagttgcaggattccattggttagc
gacattccaacaataattttcggagctgatgtaagtcatccagaagccggagaggatgtt
tgtccatcccttgcagccgttgtagcctcccaagactggccagaagtgacaaagtatgca
ggattagtatgtgctcagcctcatcgcgtggaacttattcacgatcttttcaaatgttgg
aacgatcctcatcacggtatcgtttatggtggcatgatcagagagctcttactctcattt
cagaaggcaactggaaaaaaaccacttaggataatattttacagggatggggtaagtgaa
ggacagttttaccaggttttgctatttgagcttgatgcaatccgcaaggcttgtgcatct
ttggaacctggttaccaacctccggttacatttgtcgttgttcagaaagggcatcacact
agactcttcccaaacaatcacaacgacagaaacagcaccgataggagtgggaatatcttg
ccaggtactgtggtggattcgaagatatgtcatcctaccgagttcgacttctacttgtgc
agtcacgcaggaattcagggtacaagtaaacctgctcattatagtgttatatgggacgac
aataacttcagtgccgatgagattcagtccttaactaacaacttgtgctacacttatgca
agatgtacgcgatctgtttctgtagtgcctcctgtttactatgcgcatctggcagcttac
agagctcgattctacatggaacctgatgtccacgaaaatgtaaaatcagaggttacaaga
tcgaaagttgagtcagttaggccgctgccagctctaaaagagaaggtgaagaaagtaatg
ttttactgttga
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