Trifolium pratense (red clover): 123921279
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Entry
123921279 CDS
T08949
Name
(RefSeq) putative cyclic nucleotide-gated ion channel 8 isoform X1
KO
K05391
cyclic nucleotide gated channel, plant
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04626
Plant-pathogen interaction
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09150 Organismal Systems
09159 Environmental adaptation
04626 Plant-pathogen interaction
123921279
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tpra04040
]
123921279
Ion channels [BR:
tpra04040
]
Voltage-gated cation channels
Cyclic nucleotide-gated channel (CNG)
123921279
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
cNMP_binding
Ion_trans_2
IQ_SCN5A_C
Motif
Other DBs
NCBI-GeneID:
123921279
NCBI-ProteinID:
XP_045829711
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Position
LG4:complement(60302029..60306424)
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AA seq
805 aa
AA seq
DB search
MFSKNKTWLQGFSFFHSPCPLQKIQCTLIVLYDQRLQTFSQKLLDICSISDRSLCYLFTM
FDSGYKSQYIGGQKEKFVRLDDLDANLTTPSSSRGMKKLRFNLDSLPIPFRGRGRKNTSK
SFRVGVRKGSDGLKNIGRSLKSGVTTWAVFPEDLKVSQKKVFDPQDKNLLYWNKFFEILC
ILSIACDPFFFYLPYFNHKSYCLAMDNHLAKYIVTLRTICDCIYLIRISFQFRTAFIAPS
SRVFGRGELVIDPGLIAKRYLRRYFVFDFWSVLPLPQIVWYKYLYSSRRMEVLDAKTSLL
RHVIMQYLPRFVRFIPLASEVKKTAGVFSENALLGAMYYLIWYMLASHISGSVWYLLSIE
RNDTCWTNACKAVQGCNTHFLYCGSSNKHIRGYESWRNVSEKVLKSKCFVDDGNSPFNYG
IFSQAIESGICSSIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLVL
FSLLIGNMQTYLNSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRRYDQYKWLNTRGV
DEESLVQNLPKDLRRDIKRHLCLNLVRRVPLFANMDERLLDAICERLKPSLYTEKTYIVR
EGDPVDEMLFIIRGRLDSVTTDGGRSGFFNRGILKEGDFCGEELLTWALDPKSAANLPSS
TRTVKAMSEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIYIQAAWRK
YLRRKRRKEEEEEYYESDYPGSDDPSQALVPRTESSSKFGFNTTIYASRFAANLRGHRHR
VPSSNDLMNIPKPPEPDFSALDNEE
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgttctcgaaaaacaaaacatggttacaaggtttctccttcttccattctccttgtcct
ctccagaaaattcaatgtacattaatagttttgtatgatcaacgccttcaaacattctca
cagaaattgctagacatatgtagtatttctgacagatctctatgttatctcttcacaatg
tttgattctggttacaagtcacagtatattggaggtcagaaagagaaatttgtgaggttg
gacgatttggatgcgaatttgactacgccatctagctcaagagggatgaagaaattaaga
tttaatttagattctttgcctattccttttcgtggtcgcggaagaaaaaacacatcaaaa
tcgtttcgtgtaggagtgagaaagggatcagatggactaaaaaatattggaagatcactc
aaaagtggagtcactacttgggcagtgtttccagaagatcttaaagtgtcacagaaaaaa
gtatttgatcctcaagataagaatcttctgtactggaacaaatttttcgagattctttgc
attctttctatagcttgtgatcctttctttttttatcttccttatttcaaccacaaatca
tattgtttagccatggataaccacctagcaaagtatattgttacattgagaacaatatgt
gattgcatttatctcatccggataagtttccaattccgcaccgccttcattgcgccttca
tctcgagtatttggaagaggtgaacttgtcatagatcctggattgatcgcgaagcgatat
ttacgacgctacttcgtttttgatttctggtctgtactgccattgccacagattgtatgg
tataaatatctttatagttcaagacgtatggaagtattggatgcaaaaacatcactattg
agacatgttataatgcaatatttaccgagatttgtacgctttatacctttggcttcagaa
gttaaaaaaacagctggtgttttttcggaaaatgcattgcttggtgccatgtactatttg
atctggtatatgcttgctagccatatatcaggttctgtctggtacttattatccatagaa
cggaacgacacgtgctggacgaatgcatgtaaagcagttcaagggtgtaatacacatttt
ttgtattgtggaagttcaaataagcatatacgaggatatgaaagttggagaaatgtcagt
gaaaaggttcttaaaagtaaatgctttgttgatgatggtaactcaccttttaattatgga
atcttctctcaagctattgagtctggtatttgttcttccatagaagtctttcccaaattt
tgttactgtctatggtggggccttcaaaatttgagtacacttggtcaggggcttctaact
agtacctaccctggagaggttatgttttccatagtaatagctattatggggcttgtgctt
ttttctcttttgattggaaacatgcagacctaccttaattcaatgtcggttcgtctggag
gaaatgaggatcaaaaggcgtgactccgagcagtggatgcatcatcgcttgcttcctccg
gagctaagggaaagagtcagacgttacgaccaatacaagtggctgaacacccgaggggtc
gatgaagaaagcttggttcagaatcttccaaaagatctcagaagagatatcaaacgccat
ctttgtttgaatttggtcagaagggttcctctctttgctaacatggacgaacgcttgctt
gatgcgatatgcgagcgattgaaaccaagtttatatacagagaaaacttacatagttagg
gaaggtgatccagttgatgagatgttgttcatcattcgtggtcgtctagatagtgttact
acagatggtggaagaagcggctttttcaacagaggaattttgaaggaaggtgatttctgt
ggtgaagagttgctaacatgggcattggatccaaaatctgctgctaacttgccatcatca
acaagaacagtgaaagctatgagtgaggtagaggcatttgctttagaagcagaggaatta
aagtttgttgcatcacagtttagacacatacatagcagacaggttcagcatacgttccga
ttctactcgcaacaatggagaacatgggctgctatctacattcaagctgcatggaggaag
tatttaaggagaaaacgcagaaaggaggaggaagaagaatattatgaatctgattatccg
ggaagtgatgatccttcacaggctttggttccgcgtactgaaagttcgtcaaaatttgga
tttaatacaacaatctatgcttctcggtttgctgctaatcttcgtggtcatagacatcga
gttccaagttcaaacgacctgatgaacattccaaagcccccagaacctgacttcagtgct
cttgataatgaagagtga
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