Trifolium pratense (red clover): 123921404
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Entry
123921404 CDS
T08949
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123921404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123921404
03036 Chromosome and associated proteins [BR:
tpra03036
]
123921404
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
123921404
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
123921404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
123921404
NCBI-ProteinID:
XP_045829882
LinkDB
All DBs
Position
LG1:15731151..15739327
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AA seq
1018 aa
AA seq
DB search
MFGSTNPFGQSSSPFGSSQSVFGQQNNSSNNPFAPKPFGSPTPFGSQTGTSMFGGSSTGV
FGAAQTSSPFSSNTTFGASSSPAFGSSTPSFGAPSTPAFGNSSSSSFGGSSVFGQKPAFG
GFGSTPTQTSPFGSATQPSQPAFGSNTQQSQPAFGSSIFGSSTPFGASSQPAFGSTGTPA
FGAPSTPAFGATSTPAFGTTSTPAFGATSTPAFGSTTTPAFGSTGSAFGMSNTSVFGGGG
AFGASSSPVFGSSTTPAFGASSSPAFGASSTPAFSFGSSTQAFGQSSSAFGTSSPFGSTT
SAFGGQSSAFGSQTPTQAFGNTGIGQSGFGGQRGGSRVASYSATTESDGTAGQSGKLESI
SAMPVYKDKSHEELRWEDYQLGDKGGPIASAPQSTGMPGFNSSTTQTNAFAPSPSPAFGQ
SSANPFSSPTPNSNNPFAPKTSTFGQSFGSSAPAFSSPAFGSSTSAAAPSIFGPSQTTFG
VNSSSQPFGSSPSFGVNTSSQPFASTSSQFGSSIFGNTQSSPLFSTTTPANPQSGSTFGQ
NNPPFGQPGAFSQSNLFNPPSSGLAGSIFSSSTSHTSNALTGFGQTTPSMSTPFQTAQPA
QSSGTFAFSNFGQTQPGGGSSFGGTQGMFGQNNFGLQTTPQNSVVAQPAPINTNPFGTLP
ALPQMSIGRVGSTPSVQYGISSMPVQDKPAPVRISSVLTARHLSQRRIKYPLRKYKNEES
RVPFFSNDEDTPTTPKADALFIPRENPRALIICPMDQWPGKASEKASSFKDRYTSANENG
ISSREADTAPNDSTSSEDKERTAAENGVVKEQVQPVGTKHASNGSNEDHSLQKADMYKTL
GGHRAGEAAIVYEHGADVEALMPKLRKSDYFTLPRIHELAAKERAEPGFCSHVKDFVVGR
QGYGSIRFLGVTDVRGLDLEPIVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCF
DKKTGQQYTGGPRIEKYKEMLKRKAEDQGAEFVSYDANKGEWKFMVNHFSVYKLVDED
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgtttggttcaacaaatccttttgggcagtcttcgagcccatttgggtcgtcgcagtcc
gtgtttgggcagcagaacaattcgagtaacaatccgtttgctcctaagccttttggtagc
ccaacaccatttggatcgcaaaccggtacttcaatgtttggaggttcttccacaggtgta
ttcggcgcagctcaaacatcgtctccattttcttccaatactactttcggagcttcgtct
tcaccagcttttggtagttcaacaccttcatttggggcaccatcaactccagcttttggt
aattcatcatcgtcttcgtttggtggatcatcagtctttggtcagaagcctgcttttgga
ggttttggctctactcctactcaaacaagtccatttggaagtgccacccaaccatcacaa
ccggcatttggaagtaacacccaacaatcacaaccagcatttggaagcagcatatttggt
tcctcaacaccttttggcgcttcatcccagccagcatttggttcaacaggcactcctgca
tttggtgctccgagcactcctgcatttggtgcaactagcacccccgcttttggtacaacc
agtaccccagcttttggtgcaaccagcacccctgcatttggttcaactacaaccccagct
tttggtagcacaggaagtgcatttggcatgtcaaatacttccgtgtttggaggtggggga
gcattcggggcttcaagtagtcctgtatttggctcatcaaccacacctgcatttggggcc
tccagctctcctgcttttggtgcttctagtaccccagcttttagttttggttcctccact
caggcttttggtcagtctagttctgcatttggtaccagcagcccatttgggagtacaacc
tcagcctttggaggtcagagttctgcatttggatcacagacccccactcaagcatttgga
aatactggtattgggcagtcaggatttggaggtcaacggggtggaagtagagtagctagt
tactcggctacaactgagtcggatggtaccgctggacaatctggaaaattggagtccata
tcagccatgcctgtttacaaagataaaagccacgaggagctaagatgggaggactatcaa
ttgggagataaaggtggaccaattgcctctgctcctcagtcaactggtatgccaggcttt
aattcatctacgacacagacaaatgcctttgctccttctccttcacctgcatttggtcaa
tcatcagccaatcccttctctagcccaacacctaattctaacaacccatttgcaccgaaa
acttcaacatttggtcaatcatttggaagttcagctcccgctttcagttcacctgcattt
ggctcttcaacatcagcagcagcgccatctatttttggcccatcccaaactacatttggg
gtcaactcttcgtcacagccatttggctcatccccttcatttggggtcaacacttcatca
caaccatttgcatctacgtcttcccaatttggctcaagcatttttggcaacacccagtca
tccccattatttagcactaccacccctgcaaatccacagtctggttctactttcggtcag
aataaccccccctttgggcagcctggtgcttttagtcaatccaacttgttcaatccacct
tcgtccgggcttgctggaagcattttctcaagcagcacatcacacacatctaatgctctg
acaggttttggtcaaacaacgccgtccatgtcaacacctttccagactgcacaacctgct
cagtcgagtggtacgtttgcctttagcaacttcggccagacacaacctggtggtggaagt
agcttcggtggaactcaaggcatgtttggtcagaataattttggactgcagactaccccc
cagaattctgtggttgcacaaccagcacccatcaatacaaacccatttggaacacttcct
gctttgcctcagatgtcaattggtcgagttggaagcactccttccgttcaatatggaatc
tctagcatgcctgtccaggacaaacctgctcctgtaagaatatcctccgtattgactgct
cgccacctctcacaaagaagaatcaagtatcctctaaggaaatataagaatgaggaatca
agggttccattctttagtaatgacgaggacactccaacaacaccaaaggctgatgccctt
ttcattcctagggaaaatccaagggcgttgatcatttgtcccatggatcagtggcctgga
aaggcttctgagaaagcatcttcttttaaggatagatacacctcagcaaatgagaatggg
ataagctcaagagaagcagacacagcacccaacgacagtacaagctcagaggataaagag
aggactgcagctgaaaatggtgttgtgaaggagcaagttcagcctgtaggtaccaagcat
gcatccaatgggagtaacgaagaccattctctgcagaaggcggatatgtacaagacactc
ggtgggcacagagctggtgaggctgccattgtgtatgaacatggagctgatgttgaggca
ctgatgccaaagctgcgtaagtctgattacttcacactgcctcgaatacatgaactggcg
gccaaggaaagagccgaaccaggattctgcagtcatgtcaaggactttgtggtcggaagg
caaggttatggtagcatcagatttttgggtgtgacagatgtacgagggcttgatcttgag
cccattgttcagtttaacaatcgtgaggtgattgtatacatggatgattcaaagaaacct
cctgttggacaagggctgaataagcctgctgaggtcacactgctcaacataaaatgtttt
gacaaaaaaactggacaacagtacactggagggccaagaatcgagaaatataaagagatg
ctcaagagaaaggctgaggaccaaggtgctgagtttgtatcatatgatgccaataaagga
gagtggaagttcatggtcaaccacttcagtgtttacaagctggtagatgaggactaa
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