Trifolium pratense (red clover): 123921556
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Entry
123921556 CDS
T08949
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123921556
09122 Translation
03013 Nucleocytoplasmic transport
123921556
03015 mRNA surveillance pathway
123921556
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123921556
03041 Spliceosome [BR:
tpra03041
]
123921556
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123921556
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123921556
Spliceosome [BR:
tpra03041
]
Complex C
Other components
EJC/TREX
123921556
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123921556
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
123921556
NCBI-ProteinID:
XP_045830102
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All DBs
Position
LG4:5183362..5190439
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AA seq
426 aa
AA seq
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MGELKDTEVYEEELIDYEEEDEKALDSTKPSTETVKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLC
HTRELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALT
RDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKDIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLVECNFPSICIHSGMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAGDSEVLNQVQSRFEVDIKELPEQIDT
STYMPN
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaattgaaagataccgaggtttacgaggaagagcttatcgactatgaagaagaa
gatgaaaaggctcttgattctactaaaccctctactgaaactgtcaagaagggctacgtt
gggatccatagttcgggatttcgggacttcctgttgaaaccagagcttcttcgcgccatt
gtagattcgggatttgagcatccttcagaagtgcaacacgagtgcatccctcaagcaatt
ctaggaatggatgtcatttgccaagcaaagtctgggatgggaaagaccgctgtttttgtt
ctgtcaacacttcagcaaattgatcctgttcctggtcaagttgcagcacttgttctttgc
cacacaagagaactagcttatcagatttgtcacgaagttgaaagattcagcacatatctt
ccagatataaaagttgctgttttctatggtggtgtcaacatcaaggttcacaaagaattg
ctcaagaatgagtgtccccacattgttgttggaacacctgggaggattctggccctgact
agagacaaggaccttggtttgaagaatgtgaggcattttatacttgatgagtgtgacaag
atgctggaatcacttgacatgagaagagatgtgcaagagattttcaaattgactccccat
gataaacaagtgatgatgttttcagctacactcagcaaagatatccgtcctgtttgcaag
aaatttatgcaagatcccatggaaatttatgtagatgatgaggccaagttgactcttcat
ggtcttgttcagcactacattaaattacaagagccagagaagaatcgtaaactgaatgat
cttctagatgctcttgacttcaaccaagttgttatatttgtcaaaagtgttagcagagca
gcagaattgaacaagttgcttgttgagtgtaacttcccatcaatatgcatacattctgga
atgtcacaagaagaaagattgaagcgatacaagggcttcaaagaggggaaacaaaggatt
ctcgtggcaacagatttagtaggaagggggattgatattgaacgtgttaatatagtcatc
aactatgacatgcctgattctgctgatacctatcttcatagggtgggaagagctggtaga
tttggcaccaagggacttgcaattacctttgtgtcttcagctggtgactctgaagttctt
aatcaggtgcaatctaggtttgaggttgatataaaggagcttcctgaacaaattgacacc
tccacatacatgcctaattga
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