Trifolium pratense (red clover): 123921675
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Entry
123921675 CDS
T08949
Name
(RefSeq) structural maintenance of chromosomes protein 3-like
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpra03036
]
123921675
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
tpra00535
]
123921675
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
123921675
Meiosis-specific proteins
Cohesin complex and associated proteins
123921675
Proteoglycans [BR:
tpra00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
123921675
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
AAA_23
Myosin_tail_1
ATG14
CCDC39
LEKR1
APG6_N
CC2-LZ
SPC25_N
Motif
Other DBs
NCBI-GeneID:
123921675
NCBI-ProteinID:
XP_045830269
LinkDB
All DBs
Position
LG4:23079534..23096938
Genome browser
AA seq
1204 aa
AA seq
DB search
MFIKQVVIEGFKSYREQIATEDFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRNED
RQALLHEGAGHSVLSAFVEIVFDNSDNRIPVDKEEVHLRRTIGMKKDEYFLDGKHITKTE
VMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQ
DTGNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDKQRKSLEYAIFNKEVQDAQLKLA
EIEAARTRVSEISAKKYNEVLDAQEKSKDLENKLKDITKEHQNFIKEKEVIEKQRATALK
KHTELELDVKDLQEKISGNVHAKKDAAKQLKILQNEIQESMNELDKISPSYDDLVQKEKD
ITKRIMEREKKLSILYQKQGRATQFSSKAARDKWLQKEIDDLERVLSSNTTQEKKLMEEI
ERLNDEMHGCDENINSRRTNITTLESQIARSREGFNDYKVERDKLHDKRKSLWNQENELT
AEIDKLRAEVEKAEKSLDHAIPGDVRRGLNSVRKICKTQNISGVHGPIIELLNCDEKFFT
AVEVTAGNSLFHVVVENDDKSTEIIKHLNRQKGGRVTFIPLNRVNAPRVTYPQNSDVIPL
LKKLNFRHDYTPAFSQVFARTVICKNLDVASKVARTDGLDCITLEGDQVSKKGSMTGGFY
DHRRSRLKFMNIIKQNADSIHIKEEQLEKVKYEIQEIDQKINELVTEQQKVDAQCAHNKS
EIEELKRDIANSNKQKPLFSKALAKKEKSLVDVQTQIEQLKASIAMKKTEMGTELIDHLT
PEEKKLLSDLNPEIKDLKEKLVACKTDRIESEARKAELETNLTTNLRRRKQELEAAISSI
DADSMVIDAELKSQELSDAKILVDDASNQLTRVSESINNRTKQIAKIKDDMNKLKSLESE
YERKLEEDAKELEEMLNKKNTYSAKEEEYTKKIRELGPLTSDAFDTYKRRNIRDLQKMLH
RCNDQLQQFSHVNKKALDQYINFTEQREELQKRQAELDAGDEKIRELISVLDQRKDESIE
RTFKGVARHFREVFSELVQGGHGHLVMMKKKDGDHDDDDQDEDGPREANPEGRVEKYIGV
KVKVSFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAV
GNMIRRLADIANTQFITTTFRPELVKVADKIYGVTHQNRVSRVNVISEDLALEFINQDQT
QNAE
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atgttcattaagcaggttgtgattgaaggttttaagagttaccgagagcaaattgccaca
gaggattttagtcctaaagttaattgtgttgttggtgctaatggatctggcaaaacaaat
tttttccatgccattcgttttgtgttgagtgatctctttcaaaacctacgcaatgaggat
aggcaggcactgctccatgaaggggctggacactcagttttatctgcatttgtggagatt
gtgtttgataattcagacaatcgtatcccggttgacaaggaggaagtgcacttacgtcgg
acgatcggtatgaaaaaggatgaatattttctagatggaaaacacataacaaaaactgaa
gtgatgaatttactggaaagtgctgggttctctcgctcaaatccatattatgttgtacaa
caaggaaagatagcatccctaaccttgatgaaagactctgagcgattggatttactgaag
gaaataggtggtactagagtttatgaggagaggcgtcgtgaaagtttgaaaataatgcag
gatacaggtaacaaaagaaaacaaattatccaagttgtacagtatttagacgagaggttg
aaggaactagatgaggagaaagaggaacttagaaaataccagcagcttgacaagcagaga
aaatccttggaatatgccatatttaacaaagaagttcaagatgctcagctaaaacttgca
gagatagaagcagctcggaccagggtttctgaaatatcagctaagaagtataatgaggtt
cttgatgcccaggagaaatccaaagatttggaaaataaattgaaagatataacaaaggaa
catcaaaactttatcaaagaaaaagaagttattgaaaagcaacgagcaacagcattaaag
aagcatacagagcttgagcttgatgttaaagacttgcaagagaagatctctggaaatgtc
catgccaaaaaagatgctgccaaacaattgaagatacttcagaatgaaatacaagagtca
atgaatgaactggacaaaatcagtccttcatatgatgatctagttcagaaagaaaaagac
attactaagcgaataatggagcgcgagaagaaactcagtatactttatcaaaagcaagga
cgtgcaacacaattttcaagtaaagctgctcgcgataagtggcttcaaaaggagattgat
gatcttgaacgggtgctctcttcaaacacaacacaggagaaaaagctgatggaagaaatt
gaacggcttaatgatgaaatgcatggctgtgatgagaatatcaatagccgtcgaacaaat
attactactttggaatctcaaattgccaggtctcgtgaagggtttaatgattataaagta
gaaagagacaagcttcatgataagaggaagtccttatggaaccaagaaaatgaacttact
gctgaaattgataaactgagagcagaagttgagaaggctgaaaagagtctagatcatgca
attcctggtgatgttagaagagggttgaattcagttcggaagatatgcaaaactcaaaac
atttctggagttcacggtccaattattgagttgctgaactgtgatgaaaaatttttcacc
gcagttgaagtgactgcaggaaacagcttatttcatgtggttgttgaaaatgatgacaag
tcaaccgagataattaaacatcttaatcgacaaaaaggtgggcgtgttacatttattcca
cttaacagagtaaatgctccacgcgtcacttatccacagaattccgatgtcatacctctt
ttaaagaaattgaattttagacacgactacactcccgcattcagtcaggtatttgctaga
acagttatctgcaagaatctggatgtggcttcaaaggtagctcgtactgatggtttggac
tgcataacactggaaggtgatcaagtaagcaaaaaaggtagtatgaccggtggattttat
gatcacagacgatcaagattgaagtttatgaatatcattaagcagaatgctgacagtatt
cacattaaagaggagcaattggagaaagttaaatatgagatacaagagatagaccaaaag
attaatgaacttgttaccgagcagcagaaggttgatgctcaatgtgctcataacaaatca
gagatagaagagcttaagcgggacattgctaattctaacaaacagaagccattattttct
aaagcacttgcaaagaaggagaaatcacttgttgatgtccagactcagattgagcagctt
aaggctagcattgctatgaaaaaaactgagatgggcacagagctcattgatcatttaaca
ccagaggagaaaaaactattgtcagatttgaaccctgaaatcaaagatcttaaagagaag
cttgttgcttgcaagactgatcgcattgagagtgaagcacggaaagcagagctggaaact
aatctaaccactaatctcaggagaagaaaacaagagctggaggctgcaatctcatctatt
gatgctgactctatggtgattgatgccgagttgaagagtcaggaacttagtgatgctaaa
atattggttgatgatgcatcaaatcagcttacaagagtttctgaaagtataaataaccga
accaagcaaattgcaaagatcaaagatgacatgaataaattgaagtctttggagagcgag
tatgagagaaaacttgaggaagatgctaaggaattagaggagatgctgaataaaaagaat
acatattctgctaaagaagaagaatataccaaaaaaataagggaactgggcccattgaca
tcagatgcttttgacacttacaaacggaggaatattagagatttgcaaaaaatgctgcac
aggtgcaatgatcaattgcaacagtttagtcatgtcaacaagaaagcactggatcagtac
atcaattttacagaacagcgagaagaacttcaaaaaagacaagctgaacttgatgcagga
gatgagaaaatcagagagctaatatcagtgctagatcaacggaaggatgaatcaatagaa
cgcactttcaaaggtgttgcaaggcatttccgagaagtattctcggaacttgtacagggg
ggacatggtcatctggttatgatgaagaagaaggatggcgatcatgatgatgatgatcaa
gacgaggatggtcctcgggaagcaaatccagaggggagagtagaaaagtacattggagtg
aaagtgaaggtctcttttactggacaaggggaaacacagtccatgaagcagttgtcgggg
ggtcaaaaaactgttgttgcccttacacttatttttgctatacagagatgtgatccagcg
ccgttttatctatttgatgagattgacgcagcattggatccacagtacagaaccgctgta
ggaaatatgatccggcgcctggcagacatagcaaacactcaatttatcacgacaacgttc
cgtccagagctagtaaaagttgccgacaagatatatggagtgacacatcaaaacagggtc
agccgtgttaatgttatatctgaggatcttgctctagaattcattaatcaggatcagacg
caaaatgctgaataa
DBGET
integrated database retrieval system
