Trifolium pratense (red clover): 123921937
Help
Entry
123921937 CDS
T08949
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123921937
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tpra01002
]
123921937
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123921937
03036 Chromosome and associated proteins [BR:
tpra03036
]
123921937
Peptidases and inhibitors [BR:
tpra01002
]
Metallo peptidases
Family M1
123921937
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
123921937
Coactivators
SAGA/TFTC/STAGA complex
123921937
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
123921937
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
HEAT_2
Peptidase_M1_N
zf-HC5HC2H_2
Motif
Other DBs
NCBI-GeneID:
123921937
NCBI-ProteinID:
XP_045830629
LinkDB
All DBs
Position
LG4:complement(43394343..43410239)
Genome browser
AA seq
1414 aa
AA seq
DB search
MAKPRKPKPEDPKPENSGAVVHHQKLCLSIDMDKRLVYGYTELEIAVPEIGIVGLHAENL
GIESVWVDGEPTEFEYYPHQYQQNEDEKRWSSVSSPSSAADAAVSVYLSSLEKELVPNLL
INCFKPSKTDTEHKQQEQEQPVAENGFHSSAEPKQNVRTVRIHYSIEKAETGIHFRDNVL
HTDNQIRRARCWFPCIDDNLQQCCYDLEFTVAHNLVAVSTGSLLYQVLSKDNPPRKTYVY
KLDVPVAARWISLAVAPFEFLPDHEFGFISHMCLPPNLTKMQHTVEFFHSAFSCYKDYLS
VDFPFDSYKQVFLEPEMAVSSLSLGASMSIFSSQVLYDEKVIDQTIDTRVKLAYALASQW
FGVYITPESPNDEWLLEGLAGFLADFYIKKHLGNNEARYQRYKANCAVCKVDNGGATVLS
CSASCKDLYGTQCIGLYGKIRAWKSVAVVQMLEKQMGPESFRRILQTIVTRAQDKTRSVK
TLSTKEFRHFANKVGNLERPFLKDFFPRWVGSCGCPDLRMGFSYNKRKNIVELAVLRGCT
SLQTSSTAVLDINPDTENRDGDSGYPGMMSIRVYELDGMYDHPNLPMAGEAWQLLEIQCH
SRLAARRFQKSKKGVKHDGSDDNGDVPSMDIRSSTESPLLWIRADPDMEYLAEVHFNQPV
QMWINQLEKDKDVIAQSQAIAALEASPQISFSVVNALNSFLTDSKAFWRVRIEAAFALAS
SASEETDFSGLLHLVKFYKSRRFDPDIGLPKPNDFHDFAEYFVLEAIPHAVATIRAADKK
SPREAIEFVLQLLKYNDNTGNPYSDVFWLAALVQSIGEFEFGQQSILLLSSLLKRIDRLL
QFDSLMPSYNGILTVSCIRTLAQIALKLSGFIPLDRVYELVKPFRDLKTIWQVRIEANRA
LLDLEFHCKGIDAALLLFTKYVEEEPSLRGKLKLATHVMRLCQMRDGLNSDDEITSQTLV
SLLSLLEGRMAFNNVFLRHYLFCILQILAKRPPTLHGIPRESRMLHMSLTEASNYQRNLF
VLDSESKPLELPSSTENLARDLIITEDLRDAPDEAPKVQTFDSPKDQTFDAPKDQTFEAP
KEVHVEALEVPLEIPKEDLTGFPPEAPTEAPNEISKEADTVSNSHERKRLIKIKVRQSSA
TSRADTDNQMVERSLGGREIDHGASSSVSVDAPQRFAETISIGNNNIEEVNSWHDPGSRM
TASIGSVKILSDGDELVKELQCTADSSVVYSQPQPEDPSPSSFIQDNNIDADARRFASLQ
TLSVGKFDHDGESFGKEVPARAKDKHKSKDKKRKSHKGHHDDPEYLERKRLKKEKKRKEK
ELAKLQSIEAKKPSIDLSCKKEEPKVDNVKQQLKSVEPSGNNSISDIGRIDTKPSGNNSI
SDIGKIDTKPRASEGTSGAPKIRIKIKNRMLSKS
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagcctcgcaagcccaagcccgaagacccaaagcccgaaaactctggcgccgta
gttcaccatcaaaagctatgtctctctatcgacatggataagcgcttagtttacgggtat
actgaattggaaattgcggtgccggaaattgggatcgttgggttacatgcggagaattta
gggattgaaagtgtgtgggttgatggtgaacctactgagtttgagtattatcctcatcag
tatcagcagaatgaggatgaaaaacgatggagttcggtttcttctcctagctctgctgct
gatgctgctgtttcagtgtatttgtcttctctcgagaaagaacttgtgccaaatttgctc
attaattgctttaaaccttcgaagactgatactgaacacaagcagcaggagcaggagcaa
cctgttgctgaaaatgggtttcattcgtcggccgagcctaagcagaatgtgagaacagtt
cgtattcactatagcatagaaaaggcagagacaggaatccacttcagagataatgttctt
cacactgataatcagataaggagggcaaggtgttggttcccttgtatagatgacaattta
cagcaatgctgctatgacttggagttcactgtagcacacaatctcgtggctgtcagtact
ggaagcttgttataccaggtcttaagcaaggacaatcctcctcggaaaacatatgtctat
aaattagatgttccagttgctgcaaggtggatatcgttggctgttgccccatttgaattt
cttccggatcatgaatttggcttcatatcacatatgtgtttgccacctaatctgaccaaa
atgcagcatacagtggagttcttccatagcgccttcagctgctataaagattatctttct
gtagacttcccatttgactcgtataagcaagtttttctagagcctgagatggcagtttca
tcattgagtttaggagcctctatgagtatatttagttctcaagttttgtatgatgagaaa
gttattgatcagactattgatacaagggtaaaacttgcttatgcacttgcaagccagtgg
tttggtgtttatatcactcctgagtcaccaaatgatgagtggctcttggaagggcttgcc
ggtttcttggcagatttttatattaagaagcatttgggtaacaatgaggcgcgataccag
agatacaaggcaaattgtgctgtttgcaaagttgataatggcggagcaacagttttgagc
tgttcagcttcttgtaaggatttatatggaacacagtgcattggtttgtacggaaaaata
agagcatggaagtctgtggcagttgttcagatgttggaaaagcaaatgggtccggaatct
ttccgtagaattttgcaaactatagttactcgggctcaagataaaacacgttcagtgaaa
acacttagtactaaagagtttcgacattttgctaacaaagttggaaatctagaacgtcca
tttcttaaagatttcttcccacgttgggtcggttcttgtggatgtcctgatttaaggatg
gggttttcctataacaaacggaagaatattgttgaattggctgtgttgagaggatgcaca
tcattgcagacttcaagtacagccgttcttgatattaatccagatactgaaaatcgagat
ggagattctggatatcctggtatgatgagtatcagggtgtatgaacttgatggtatgtat
gaccatcctaatctaccaatggctggagaagcatggcagcttttggaaattcaatgtcac
tcaagacttgctgctagacgatttcagaaatcaaagaaaggtgtaaaacatgatggctct
gatgacaacggcgatgtaccttcaatggatatacgctccagtacagagtctcctttatta
tggatcagagcagatcctgacatggagtaccttgctgaggttcattttaatcaaccggtt
cagatgtggatcaaccaattagagaaggacaaagatgttattgctcagtcacaagcaatt
gcagcccttgaggcatcaccccagatatcattttctgttgtaaatgccctgaacagtttt
cttaccgactccaaggctttctggagagtaagaatcgaagcagcatttgcattggcaagt
tcagcatccgaggaaactgatttttctggtctactccatttggtgaaattttacaagagt
cgaagatttgatcctgacattggactcccaaagccaaatgattttcatgattttgccgag
tattttgttcttgaggccattccacacgctgtagctacgattagagctgctgacaagaaa
agtccaagagaggctatcgaatttgttttacaactattgaagtacaatgacaacactggg
aacccttactcagatgtcttctggcttgctgcattggtccaatcaattggcgagtttgag
tttgggcaacagagtattctcctattgtcatcactcctcaagcgcattgaccggctttta
caatttgatagtctcatgccaagctacaatggaatcttgactgtcagttgtatccggaca
ttggcccagattgccctaaagctttcaggattcattcctcttgatcgcgtatatgaactt
gtaaagcctttccgagatctaaagacaatttggcaagttcgaattgaagcaaatagagca
ctccttgatctcgaattccactgcaagggcattgatgccgcacttttattatttaccaaa
tatgttgaagaggagccttccttaagaggcaagttaaaactggccacccatgttatgagg
ctatgccagatgagagatggtttgaattcagatgatgaaattacaagccaaactcttgtc
tctttgctcagtttactggaagggcgtatggcatttaataacgtatttctccgtcactac
ttgttctgcatattacaaatactggcaaaaagacccccaactctacatggaattcccaga
gaaagtagaatgttgcatatgagtcttacagaagcttctaactatcagaggaacctattt
gttcttgattccgaaagtaaacctttggaactgccaagttccaccgaaaaccttgcacga
gatttgatcataactgaggatttaagggatgcacctgatgaagctcctaaggtacaaact
tttgattctcctaaggaccaaacttttgatgctcctaaggaccaaacttttgaagctccc
aaagaagtacatgttgaagctctggaagtgcctcttgagattcccaaagaagacttaaca
ggatttccccctgaagcaccaactgaagctcccaatgaaatttccaaggaagccgatact
gtatccaatagccatgaaagaaaaaggctaatcaaaatcaaggttagacaatcttctgcc
accagtagggctgatactgataatcaaatggttgaacgatctttaggtggtcgtgaaatt
gatcacggagctagcagttcagtttcagtagatgcacctcagagatttgccgagactatt
agcattggtaataacaatattgaggaagttaattcttggcatgatcctggttcccgcatg
actgcaagcattggcagtgtaaaaattttgagtgatggtgatgaattggtcaaagaactc
caatgcactgctgattcaagtgtagtttactcacaacctcagccagaagatccgtcaccg
tctagttttattcaagataacaatatagatgctgatgcacgtcgatttgccagccttcaa
acactttcagttggtaaatttgatcatgatggagaatcatttggcaaagaagttcctgct
cgtgcgaaagataaacacaaaagtaaggataagaaacggaaaagtcacaagggacaccat
gatgacccggaatatttggagcgaaaacgattgaagaaagagaaaaaacgcaaggaaaaa
gaattggcaaaactacaaagtatagaagcaaagaaaccctccatagacttgtcatgtaag
aaagaggaacctaaagtggacaatgtgaagcagcagctgaaatctgttgaacccagcggt
aataattctatatcagacattggaaggattgataccaaacccagtggtaataattctata
tcagacattggaaagattgataccaaacccagagcatctgaaggtacatctggtgcgccc
aaaattcgtattaaaattaaaaatcgaatgctcagcaaatcataa
DBGET
integrated database retrieval system
