Trifolium pratense (red clover): 123922078
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Entry
123922078 CDS
T08949
Name
(RefSeq) sm-like protein LSM5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123922078
09123 Folding, sorting and degradation
03018 RNA degradation
123922078
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123922078
03041 Spliceosome [BR:
tpra03041
]
123922078
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123922078
mRNA degradation factors
5'-3' decay
Lsm complex
123922078
Spliceosome [BR:
tpra03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
123922078
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF7452
Motif
Other DBs
NCBI-GeneID:
123922078
NCBI-ProteinID:
XP_045830777
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Position
LG1:20235783..20243209
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AA seq
87 aa
AA seq
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MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RVTKLDQILLNGNNIAILVPGGSPDPE
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggctaataatccatcacagcttcttccatcagaactgattgaccgctgtataggttca
aaaatatgggtgataatgaaaggtgacaaggagcttgttggtactcttagaggctttgat
gtgtatgtcaacatggtccttgaagatgttactgaatatgagatcactgctgaggggaga
agggttactaagcttgatcagattttactcaatggaaacaacattgccattttggtccct
ggtggttcacctgatccagaatga
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