KEGG   Trifolium pratense (red clover): 123922078
Entry
123922078         CDS       T08949                                 
Name
(RefSeq) sm-like protein LSM5
  KO
K12624  U6 snRNA-associated Sm-like protein LSm5
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03018  RNA degradation
tpra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123922078
  09123 Folding, sorting and degradation
   03018 RNA degradation
    123922078
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpra03019]
    123922078
   03041 Spliceosome [BR:tpra03041]
    123922078
Messenger RNA biogenesis [BR:tpra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     123922078
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     123922078
Spliceosome [BR:tpra03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    123922078
SSDB
Motif
Pfam: LSM DUF7452
Other DBs
NCBI-GeneID: 123922078
NCBI-ProteinID: XP_045830777
LinkDB
Position
LG1:20235783..20243209
AA seq 87 aa
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR
RVTKLDQILLNGNNIAILVPGGSPDPE
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctaataatccatcacagcttcttccatcagaactgattgaccgctgtataggttca
aaaatatgggtgataatgaaaggtgacaaggagcttgttggtactcttagaggctttgat
gtgtatgtcaacatggtccttgaagatgttactgaatatgagatcactgctgaggggaga
agggttactaagcttgatcagattttactcaatggaaacaacattgccattttggtccct
ggtggttcacctgatccagaatga

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