KEGG   Trifolium pratense (red clover): 123922368
Entry
123922368         CDS       T08949                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03018  RNA degradation
tpra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123922368
  09123 Folding, sorting and degradation
   03018 RNA degradation
    123922368
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpra03019]
    123922368
   03041 Spliceosome [BR:tpra03041]
    123922368
Messenger RNA biogenesis [BR:tpra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     123922368
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     123922368
Spliceosome [BR:tpra03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    123922368
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 123922368
NCBI-ProteinID: XP_045831064
LinkDB
Position
LG1:11600263..11603516
AA seq 148 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGREDGPPGRQVKGIGRGFEE
GGAKGGGRGRAGPGGKPGGNRGAGRGRG
NT seq 447 nt   +upstreamnt  +downstreamnt
atgctgccactttcccttctcaagactgctcaaggccacccaatgttggttgaactgaaa
aatggggagacttataacggccatttggttaattgtgatacatggatgaacattcatctc
cgagaagtcatttgtacttctaaagatggagatagattttggcgtatgcctgaatgctac
attcgtgggaatactattaagtatcttcgagttcctgatgaggttattgacaaagtccag
gaagaaaccaagagtcgcactgatcgcaaaccacctggtgtgggacgtggaagaggaaga
ggtagagaggatggtcctcctggacgtcaagtaaaaggaattgggcgtggctttgaagaa
ggtggtgctaaaggaggaggccgaggaagggctggtccaggtggaaagcctggtggaaac
agaggtgcagggcgaggtagaggttga

DBGET integrated database retrieval system