Trifolium pratense (red clover): 123922424
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Entry
123922424 CDS
T08949
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Module
tpra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123922424
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
123922424
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
123922424
NCBI-ProteinID:
XP_045831097
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Position
LG4:29321133..29329050
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AA seq
394 aa
AA seq
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MNNQLSITILAFLLLLLASNVTSQPGVFNIRKYGAPNGDITNALKSAWKDACALTSPSKI
VVPSGWYKLQQIDLEGPCNAPIEVKVHGKILAPKNPYHLNGQDQWVRFQYIDFLTLSGRG
TFDGQGEMAWKQNDCGKNTNCKRHAMNFGFAFLNNSIIQDINSKDSKYFHVNVFGCNNVT
FTNFNINAPETSPNTDGIHIGRSTKVKIINSKIGTGDDCISLGDGSRQITVRNVTCGPGH
GISVGSLGKYPNEEPVVDLTVKNCTLNNTDNGLRIKSWPGTSVVSIASHLHFEDIIMVNV
TNPVIIDQEYCPWNQCSKKSPSKIKIRKVLFKNIRGTSATQEGVALVCSRGVPCEAIVLS
DIDLSFNGSKVIAKCANVKPTIRKSAPICMIPHV
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgaataatcaattgagtattaccatattagcttttttgttattattattagcttccaat
gtcacttctcaacccggcgttttcaatataagaaaatatggtgcacctaatggagatata
accaatgctttgaagagtgcttggaaagatgcatgtgcattaacaagtccaagtaaaatt
gtagttcctagtggttggtacaagttgcaacaaatagatcttgaaggaccatgtaatgct
ccaattgaagttaaagttcatgggaaaattttagcaccaaaaaatccttaccacctcaat
ggacaagatcaatgggttagatttcaatatattgattttcttaccttatctggtagagga
acttttgatggccaaggtgaaatggcttggaagcaaaatgattgtggcaaaaacacaaat
tgcaaaagacatgccatgaatttcggttttgcattcctcaacaattcaattatccaagac
ataaactcaaaagacagcaaatattttcatgttaatgtttttgggtgcaacaatgtaaca
tttacaaatttcaacatcaatgcacctgaaactagtccaaacactgatggaattcacatt
ggaagatcaactaaagtgaagattatcaactctaaaattggcactggtgatgattgcatc
tctttaggggatggtagtagacaaatcacagttcgaaacgttacatgcggaccgggacat
ggtattagtgtcggaagtctaggaaaataccccaatgaagaacctgttgttgatcttact
gtcaagaattgtacactaaataacacagataatggtttaaggatcaaatcatggcctggt
acctcagtagtttctattgcatctcatttgcattttgaagatatcataatggttaatgtc
accaaccctgtgattattgaccaagagtattgtccatggaatcagtgttcaaaaaagagt
ccatcaaaaattaagataagaaaagtgttattcaagaacattagaggaacttctgcaaca
caagaaggagttgctttggtttgtagtcgtggtgtgccatgtgaagctattgtacttagt
gacatagatttaagtttcaatgggtccaaagtaattgctaaatgtgcaaatgtaaagccc
acaattcgaaaaagcgcacccatttgtatgattccgcatgtatag
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