Trifolium pratense (red clover): 123922431
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Entry
123922431 CDS
T08949
Name
(RefSeq) polygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Module
tpra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123922431
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
123922431
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Motif
Other DBs
NCBI-GeneID:
123922431
NCBI-ProteinID:
XP_045831103
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Position
LG4:complement(29514148..29517117)
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AA seq
412 aa
AA seq
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MNSQLSITTIALLLLLLLLASNVTAQPGVFNIRKYGAPNGDITNYKFVCFSYSLVFLFVK
ALKSAWKDACASSSPSKVVVPSGWYKLQQIDLEGPCNAPIEVRVHGKILAPKNPYHLNGQ
DQWVRFQYINFFTLSGRGTFDGQGEMAWTQNDCGRNTNCNRHAMNFGFAFLNNSIIQDIN
SKDSKYFHANVFGCNNVTFRNFNINAPETSPNTDGIHIGRSTKVQIINSKIGTGDDCISL
GDGSRQITIRNVTCGPGHGISVGSLGRYPNEEPVVDLTVKNCTLNNTDNGVRIKTWPGTS
VVSIASHLHFEDIIMVNVTNPIIIDQEYCPWNQCSKKSPSQIKIRKVLFKNIRGTSATQE
GVALVCSRGVPCEAIVLSDIDLSFNGSKAIAKCANVKPTIRRKAPICMVPHI
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgaatagtcaattgagtattaccacaatagctttgttgttgttattattattattagct
tccaatgtcactgctcaacctggagttttcaatataagaaaatatggtgcacctaatgga
gatataaccaattacaaatttgtttgtttttcatattctctcgtttttctttttgtaaag
gctttgaagagtgcttggaaagatgcttgtgcatcatcaagtccaagtaaagttgtggtt
cctagtggttggtacaagttgcaacaaatagatcttgaaggaccatgtaatgctccaatt
gaggttcgagttcatggaaaaattctagcaccaaaaaatccttaccacctcaatggacaa
gatcaatgggttagatttcaatatattaatttctttaccttatctggtagaggaactttt
gatggccaaggtgaaatggcttggacgcaaaatgattgtggtagaaatacaaattgcaat
aggcatgccatgaatttcggttttgcattcctcaacaattcaattatccaagacataaac
tcaaaagacagcaaatactttcacgccaatgttttcgggtgcaacaatgtaacatttaga
aatttcaacatcaatgcacctgaaactagtccaaacaccgatggaattcacattggaaga
tcaactaaagtgcaaatcatcaactctaaaattggcactggtgatgattgtatctcttta
ggagatggtagcagacaaatcacgattcgaaacgtgacatgtggtccgggacatggtatt
agtgttggaagtctaggaagatatccaaatgaagaacctgttgtggatcttactgtaaaa
aattgcacactaaataacacagataatggtgtaaggatcaaaacatggcctggtacctca
gtagtttctatcgcatctcatttgcattttgaagatatcataatggttaatgtcaccaac
ccgattattattgatcaagagtattgtccatggaaccagtgctcaaaaaagagtccatca
caaattaagataagaaaagtgctcttcaagaacattagaggaacttctgcaacacaagaa
ggagtggctttggtttgtagtcgtggtgtgccatgtgaagctattgtacttagtgacata
gatttaagtttcaatgggtctaaagcaattgctaaatgtgcaaatgtaaaacccacaatt
cgaagaaaagcacccatttgtatggttccgcatatatag
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