Trifolium pratense (red clover): 123922652
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Entry
123922652 CDS
T08949
Name
(RefSeq) ubiquitin C-terminal hydrolase 12-like
KO
K11838
ubiquitin carboxyl-terminal hydrolase 7 [EC:
3.4.19.12
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
123922652
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tpra01002
]
123922652
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tpra04121
]
123922652
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
123922652
Peptidases and inhibitors [BR:
tpra01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
123922652
Ubiquitin system [BR:
tpra04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
123922652
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USP7_ICP0_bdg
MATH_2
MATH
DUF4407
ACBP4_C
RH1
TRAF_BTBD17
YvfG
ATG16
Motif
Other DBs
NCBI-GeneID:
123922652
NCBI-ProteinID:
XP_045831302
LinkDB
All DBs
Position
LG4:38976701..38980441
Genome browser
AA seq
717 aa
AA seq
DB search
MENITGWMAPGSKDERRTNTVVAQPEIANTVDRLHVKEPSPFRFTWRIDRFSQKKLKKKK
VYSDVFEVGGSKWRLLIFPYGNNVDFLSVYLAVANSYSLPCDWSRHANFSMKVVNQYYYY
LSKRKGSLFNLLLKLLHDELRCMYVEHSFMKHRFNERESDWGFRYFIPFDELYNPSRGYL
VNDTLVVEVEVEVTCSVDEKEDEDLYTYIKVVQDEDLVEQIGNYIFFDLVDDEKVRSFRV
QKKTTFYIFKEEVANEFGIPAQFLRFWLWEKRQNNTYRPSRPLTQIEEAGPVGQFNTVFL
EVEHGPGFRLITPLNKRNDDILLFFKLYYPEKEELRYVGKLFVNRTDKPPEILTKLNKLA
GYDPDEEINLFEEIRFSPVVMCEPVDKKLTFQQSEVENGDIICFQKASAMDNVKLFRYPD
VPSYLKYVSNERSSAFSSSGKESKDEQSSEEQNKNIIDFQQTNCNENTDALESKVKIETI
EKIDAMVDEDVIVAIDKVLSEWITISLQYQPSNGGQEKVSKLLQELRNIAFKEDLVKKFK
EGLVVHEVNFNAVKEKIDANDDLFSSHQLEQVSVVVNLLNNIVRVFEKLEKLKKERDSAK
KSIDQDKEALKETRQKILTSKTSFTNHQTEFDSLDAQIYDLKAKLEELQGERAKIAEVQD
QEKDKITSLNKEVKSILHRLVDDQIKLKNVVVKIVEAETNLQNLEKLYQTFKKFPPF
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatatcacaggctggatggcaccaggaagcaaagatgaaagaagaacaaataca
gtcgttgctcaaccggaaattgccaacactgtggatagattgcacgtcaaggaaccttct
ccttttcggttcacatggagaattgacagattttctcagaagaagttgaaaaagaaaaag
gtctattcagatgtgtttgaagttgggggttctaaatggcgtctacttattttcccatat
gggaacaatgtcgactttttgtccgtgtatttagctgttgcaaattcatatagtttgccc
tgtgattggagtagacatgcaaactttagcatgaaagtagttaatcaatactattattac
ctatctaagagaaaaggtagcctatttaatttgttacttaaattgttacacgatgaacta
cgatgcatgtatgttgagcatagtttcatgaagcaccgtttcaatgaacgagaaagtgat
tggggtttcaggtacttcatacctttcgatgaattgtataatccttcaagagggtatctt
gtgaatgatactcttgtagttgaagttgaagttgaagtaacatgtagtgttgatgagaaa
gaagatgaagacctatacacttatataaaggtggtacaagatgaagaccttgtagaacag
attggaaattatatattttttgatcttgtagacgatgaaaaagtgaggagtttccgtgtt
caaaagaagacaaccttttacattttcaaggaagaggttgctaacgagtttggcatacca
gctcaattcctgcgcttttggctatgggaaaagcgtcaaaacaatacatatcgtccttca
aggccattgacacaaattgaggaagcaggacctgttggacaatttaatacggtgtttttg
gaagtggagcatgggccgggttttcgtctcatcacaccactcaataagcgcaatgatgat
atattactttttttcaagttatattatcctgaaaaagaagagctacgttatgttggaaag
ctctttgtgaaccgtactgataagccaccagaaatcttgacaaagttaaataaattggct
ggatatgatcctgatgaagagattaatctttttgaggagattaggttttcgccagttgtc
atgtgtgaacctgttgacaagaaattaacatttcaacaaagcgaggtagaaaatggtgat
attatatgctttcaaaaagcttctgcaatggataatgtgaaacttttccgctatcctgat
gtgccttcatacttaaaatatgttagcaatgaacgatcatcggctttttcttcatcaggc
aaagaatctaaagatgaacaatcatcggaggagcaaaacaaaaacattatagactttcaa
caaacaaattgtaacgaaaacaccgatgctctagagtcaaaagtgaaaatcgagaccatt
gaaaaaattgatgctatggtagatgaggatgtcattgttgcaattgacaaagttttatca
gaatggattaccatttcattacaatatcagccttctaacggagggcaagaaaaagtctca
aaacttcttcaagaattgaggaatatcgcctttaaagaagacttggttaaaaaatttaaa
gaaggtctcgtcgttcatgaagttaacttcaatgcagtcaaggaaaaaattgacgctaat
gatgacttgttttcctctcaccaattagaacaagtcagcgtcgttgtcaaccttctcaac
aatattgtgagggtgtttgagaaacttgaaaagttgaaaaaagagcgagactcggctaag
aagagcattgaccaagataaagaagcattgaaggagacaagacagaaaatattgacctca
aagacttctttcacaaaccaccaaaccgaattcgactctcttgatgctcagatttatgat
cttaaagcgaagctcgaagaactccaaggtgaaagggccaaaattgctgaggttcaagat
caagagaaagataagataacatctttgaacaaagaagttaaatccattttacatcgcctc
gttgatgatcaaatcaagttgaaaaatgttgtagttaaaattgtggaggctgaaactaat
ttgcaaaaccttgagaagctttaccaaaccttcaagaaattccctccattttga
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integrated database retrieval system
