Trifolium pratense (red clover): 123922924
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Entry
123922924 CDS
T08949
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123922924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123922924
03009 Ribosome biogenesis [BR:
tpra03009
]
123922924
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123922924
Spliceosome [BR:
tpra03041
]
Complex A
U2 snRNP components
U2 related factors
123922924
Complex B
123922924
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
123922924
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
90S particles
Helicases
123922924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
AAA_22
AAA_19
UvrD-helicase
DEAD
DNA_pol3_delta
Motif
Other DBs
NCBI-GeneID:
123922924
NCBI-ProteinID:
XP_045831537
LinkDB
All DBs
Position
LG4:54044858..54049852
Genome browser
AA seq
721 aa
AA seq
DB search
MANSNGGNINQWTGQPYSEKRKNLAVWQHRDEFLNAFRANQVLALVAQTGSGKSTQIPQF
VLDDITSSDVCSKMMIACTQPQKVAVMSVSHRVAEEMGVTIGEEVGYKIKFEDCTSSRTV
LKYIKDDMLLKEAMIDPLLQCYKVIIIDDIQERTLSTDLLLGYLSQLLTKRPDDLKLVFM
TSTSLESEKFKSFFQQHYPSIHIMKLPERLHPVEIVYSTHEELERNNYLDAVIKTVVNIH
RHEPHGDVLVLLSEEEEVEDVCQKISKEFSKLGDLVGPMKLVPLYSYLPATMQHKIHEET
CSGRKIVVTTDIVESSLTIHGISYVVDSGFVKKKVFDPKLHIESLVMSPISKASADMRSE
HAGRSTSDRRKGKCFRLYTEESYNNNLDLETCPEILRLNLANMILSLWKLDVDDFWSFGY
VDFPDVDSLVCAFATLVNLGALDQECKLTNIGEIMSMFPLEPQMSKMLVVSPQFNCSEEI
LSISSMLSVPNCFVGYREEQKEVKAKFHNIHGDHLTLLNIYNAYKQNNEDLSWCNDNFIN
YWALKEADNIRQELASIMMTRLKLNKCSTDDNNSINIRKSILAGYFMNMAHLDTTGNYIT
LEGNKVVNFNPSSNDLDGHKPKWVIFNALDATNYNFIHTITTIHCDWLVDSEAPWSMYYE
LSKFSNSEAKSILERLRAYASYARMLKERKLADGKLGKHANISTFHRLLPYQNNRKRKQR
I
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattccaatggtggtaacataaatcaatggactggacaaccttattcagagaag
aggaagaacctcgcagtttggcagcacagggatgagtttttgaatgcttttagggccaac
caagttttggctctcgttgctcaaactggttctggcaaatccacacagatccctcaattt
gttttggacgacataacatcatcggatgtatgttcaaagatgatgattgcatgcactcag
cctcagaaagttgctgtaatgtctgtttcacatcgtgtggctgaagagatgggtgtcact
attggggaagaagttggttacaaaatcaaatttgaagattgcacaagttcaaggacagtt
ttgaaatatatcaaagatgatatgcttttgaaagaagcaatgatagatccacttttacaa
tgttacaaagttataattattgacgacatacaagaaagaactttgtcaaccgatttgcta
cttggatatttatctcaactgcttacaaaaagaccagacgacttgaagttggtttttatg
actagtacaagtcttgaatctgaaaaatttaagtcctttttccaacaacattatcctagt
attcatattatgaaacttcccgaaaggttacatcctgtggaaattgtttacagtactcat
gaagaactcgaacggaataattacttggatgctgttattaagactgtggtgaatatacat
agacatgaacctcatggagatgtacttgtgttattatctgaagaggaagaggtagaagat
gtatgtcaaaaaatatcaaaagaattttctaagctaggggatcttgtgggccctatgaaa
ctggttcctctatattcttatctacctgcaacaatgcaacacaagattcatgaggaaaca
tgtagtggaagaaagattgtggtaacaacagacatagtagaatcttccttaacaattcat
ggtatttcctatgttgttgactctggatttgttaagaaaaaggtttttgaccctaaactt
catatagaatctctagtaatgtcaccaatatcaaaagcaagtgcagatatgagatcagag
catgctggtagaagtactagtgatcgacgaaaggggaaatgttttagactttatacagaa
gaaagttacaacaacaatcttgatttagagacatgtcctgaaattttgagattaaatctt
gccaacatgattctatctttatggaaacttgatgtagatgatttttggtcttttggttac
gttgactttcctgatgttgactcattagtgtgcgcctttgcaacattggtgaacttgggt
gcattggatcaagagtgcaagttaacaaatattggtgagattatgagtatgtttcccttg
gaaccacaaatgtcaaagatgctagttgttagtcctcaattcaactgttcggaagagatt
ctatcaatttcttccatgctttcggtacccaattgcttcgttggatatagagaggaacaa
aaagaagtaaaagctaagtttcacaacattcatggagatcatctcacactcttgaacatc
tacaatgcatacaaacaaaataatgaggatctctcttggtgcaatgataatttcattaat
tattgggcactaaaagaagctgataatattagacaagagttggccagtatcatgatgact
agattgaaactgaataaatgtagtacggacgataacaatagtatcaacataagaaagtct
attcttgctggatatttcatgaacatggcacatttagatactactggaaattacatcaca
ttggaaggaaataaggtggtgaattttaatccatcatcgaatgacttagatggccacaag
cctaaatgggtcatttttaatgcattagatgctactaattataattttattcatacaata
acaacaatacactgcgattggttggtcgattcagaagcaccatggtctatgtactacgaa
ttatcaaaattttctaatagtgaagcaaagagtattcttgagagacttcgtgcatatgct
tcgtatgcaagaatgttgaaggaaagaaaacttgcggatggaaagcttggaaagcatgca
aacataagcactttccatcgcttgttaccttatcagaacaataggaaaagaaaacaaaga
atttag
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