Trifolium pratense (red clover): 123923082
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Entry
123923082 CDS
T08949
Name
(RefSeq) cell division control protein 48 homolog E
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123923082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123923082
03009 Ribosome biogenesis [BR:
tpra03009
]
123923082
04131 Membrane trafficking [BR:
tpra04131
]
123923082
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpra04147
]
123923082
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
123923082
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
123923082
Membrane trafficking [BR:
tpra04131
]
SNARE
SNARE associated proteins
Others
123923082
Autophagy
Aggrephagy
Other aggrephagy associated proteins
123923082
Exosome [BR:
tpra04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
123923082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_33
AAA_2
AAA_5
AAA_22
CDC48_2
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
Mg_chelatase
AAA_17
AAA_28
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
Vps4_C
AAA_lid_PRS2_C
AAA_7
Viral_helicase1
NB-ARC
AAA_24
NACHT
TsaE
DUF815
Zeta_toxin
Zot
Acyl-CoA_dh_2
Motif
Other DBs
NCBI-GeneID:
123923082
NCBI-ProteinID:
XP_045831679
LinkDB
All DBs
Position
LG1:43527450..43531628
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AA seq
808 aa
AA seq
DB search
MANQPESSDSKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPDTMEKLSLFRGD
TILIKGKKRKDTICIALADETCEEPKIRMNKVVRNNLRVRLGDVVSVHQCPDVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDMFLVRGGMRSVEFKVIECDPAEYCV
VAPDTEIFCEGEPVKREDEDRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSEDVDLEKIAKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVTNEHFSTALGSSNPSALRETVVEVPNVSW
DDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISIKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSSGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHNI
FKAALRKSPIAKDVDIKALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEN
PEAMEEDNEDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAD
SSAGGTAAAASADPFASAGGADEDDLYS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggctaaccaacctgaatcatccgattccaagggaacgaaaagagactttagtactgcg
attctcgagcggaagaaggctccgaatcgtctcgtcgtcgatgaggccgtcaacgatgac
aactccgtcgtcgcacttcatcctgatactatggagaaactttcactctttcgcggtgat
accattctgatcaagggaaagaaaagaaaagacacaatttgtattgcacttgctgatgaa
acatgtgaggaaccaaagataagaatgaataaggttgttagaaacaatcttagggttaga
cttggagatgttgtttctgttcatcaatgtcctgatgtcaaatatggaaagcgagttcac
attcttcctgtggatgatactattgaaggagtcactgggaatctctttgatgcttactta
aaaccttatttccttgaggcatatcgtccagttaggaagggtgatatgttccttgttaga
ggggggatgagaagtgtggaattcaaggttattgaatgcgaccctgctgagtattgtgtc
gttgcacctgacactgagatcttctgtgaaggagagcctgttaaaagggaagatgaggat
aggttagatgaggttggttacgatgacgttggcggggttagaaagcagatggctcaaatc
cgggaactggtggaactgccattgaggcatccacaattattcaagtctattggtgtgaaa
ccaccaaaaggtattctgttgtatggaccccctggatctgggaagactttaattgcacga
gccgttgcaaatgaaaccggtgctttctttttctgcatcaatggtcctgagatcatgtca
aagctggctggtgagagtgaaagtaatttgaggaaggcatttgaagaagctgagaagaat
gctccttcaatcatcttcattgatgaaatagactccattgccccaaagagggagaagaca
aatggggaagtcgagaggagaattgtttcccagctcttgaccctcatggatggacttaaa
tcccgtgcacacgttatagttatcggagcaacaaatcgtcccaacagcattgaccctgct
cttcgtaggtttggaaggtttgatcgggagatagatatcggtgtaccagacgaagttgga
cgtctcgaggttcttcgcatccacacgaaaaatatgaagctttcagaagatgttgatcta
gaaaagattgctaaggaaacccacggttatgttggtgctgatttagctgctctgtgtact
gaagctgcacttcagtgcatcagagagaaaatggatgtgattgacctagaagatgaaacc
attgatgctgagatattgaactcaatggcagtcacaaatgaacatttctcgactgcactt
ggatcaagcaatccttctgctctccgtgaaacagttgttgaagtgcccaatgtcagctgg
gatgatattggtggtcttgaaaatgttaagcgagaactccaagagactgttcaatatcca
gtggaacaccctgagaaattcgagaagtttggaatgtcaccttcaaagggagttctgttc
tacggtcctcctggttgtggtaaaactcttttggccaaagctatcgccaatgaatgtcaa
gcaaacttcattagtatcaaaggtcctgagctactcactatgtggtttggagaaagtgag
gctaatgtgagagaaatttttgacaaagctcgtggttctgctccatgtgtcctattcttt
gatgaacttgattctatagcaactcagagaggtagtagttcaggagatgctggcggtgct
gctgacagagttttgaatcaactgcttacagaaatggatggaatgtcagcaaagaaaact
gtgtttattatcggggccactaatcgacctgatattatagaccctgctctactacgacct
ggacgtctggaccagttgatctatatcccccttccagatgaggattcccgccataatata
ttcaaagctgccttgagaaaatcccccatcgcaaaggatgttgacatcaaagctcttgca
aagtacactcaaggcttcagtggtgctgatattactgagatttgccaacgtgcatgcaag
tatgctataagggagaacattgagaaggatattgagagagaaagaaggagaagtgaaaat
cccgaggccatggaagaggataatgaagatgaggtagctgaaatcaaagctgcacatttt
gaagaatccatgaaatatgcacgaaggagtgtaagcgacgctgacattcgcaagtaccaa
gcgtttgcccaaacattgcagcaatcaagagggtttggaagcgagttcaggtttgcagac
tctagtgccggcggaactgctgctgctgcttcagctgacccttttgcaagtgctggggga
gctgacgaggacgacctctacagttag
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