Trifolium pratense (red clover): 123923173
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Entry
123923173 CDS
T08949
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
123923173
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123923173
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
123923173
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
DUF6437
Motif
Other DBs
NCBI-GeneID:
123923173
NCBI-ProteinID:
XP_045831800
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Position
LG4:complement(43350986..43359987)
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AA seq
940 aa
AA seq
DB search
MDENFDGFNNKLPELKLDSKQAQGFLSFFKTLPDDPRAIRFFDRRDYYTAHGENATLIAK
KYYHTTTALRQLGSGSNALSSVSVSRNMFETVARDLLLERTDHTLEVYEGSGSNWRLVKS
GTPGNIGSFEEVLFANSEMQDSPVVVALSLNFRESGYTIGLGFVNLTKRLLGMAEFLDDS
HFTNVESALVALGCKECLVPIERGKSIEYKMLCDVLTKCGVMLTERKKSEFKTRDLVQDL
GRLVKGSIEAVQDLVSGFEFAPGALGALLSYADLLADESNYENYTLRRYNLDSYMRLDSA
AMRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLNMWLKQPLVDVNEINSRLDVVQA
FVEDTVLRQDLRQHLKRISDIERLVHNLQKRRAGLQHVVKLYQSSIRLPYIKSALDRYDG
QFSSMMKSRYLKDLELWTGADRLNKFIELVETAVDLDYLENGEYMISSSYDSALTELKEQ
QELLDSQIHDLHRQTAVDLDLVVDKALKLDKGTQFGHVFRITKKEEPKIRKKLNTQFIVL
ETRKDGVKFTNTKLKKLGDKYQQILEEYKSCQKQLVNKVVELSATFSVVFESLAELISEL
DVLLSFADLASSCPTPYTRPDITSSDTGDIVLEGSRHPCVEAQDWVNFIPNDCKLIRGKS
WFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDKASISVRDCIFARVGAGDCQLRGI
STFMQEMLETSSILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHIVDVIKAPTLFAT
HFHELTALAHENDPHKQIVGVANYHVSAHIDASTRKLTMLYKVEPGACDQSFGIHVAEFA
NFPESVVALAREKAAELEDFSSSAISLIDSSTEEVGSKRKRAFEPDDISKGAAKARQILE
AFVALPLDTMDKTQALQEVKKLKDNLEKDAQNCHWLQKFL
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggacgaaaacttcgatggcttcaacaataaactccccgaactcaaattagattctaag
caagcacaagggtttctgtcatttttcaaaaccctacctgatgacccgagggccattagg
ttttttgatcgacgggattactatactgcccatggggagaatgcaacgctcattgccaaa
aaatactatcacactaccactgctttgcgacagttgggcagtggatcaaatgctctttcc
agtgtgagtgtcagtcggaacatgtttgaaacagttgcccgtgatcttcttctggagaga
acagaccatacacttgaggtttatgagggcagcggctctaactggagactggtcaaaagt
ggcacacctggtaatattggcagttttgaagaagttctgtttgctaacagtgagatgcaa
gattctccagttgttgttgcactgtcacttaacttccgtgaaagtgggtacaccattgga
ttaggatttgttaatctaactaagagactacttgggatggctgaattccttgatgacagt
cacttcacaaacgtggagtcagcattggttgctcttggttgcaaagagtgccttgtacct
attgagcgtggaaaatctattgaatataaaatgttgtgtgatgtgttgactaaatgtggc
gtgatgctaactgagagaaagaaatccgagtttaagactagagatctggtacaggatctt
ggcaggcttgtcaaaggttctattgaagcagttcaagatttagtgtctggatttgaattt
gcaccaggtgctttgggggcactgctatcttatgcagatttacttgcagacgaaagcaat
tatgaaaattatactctgcgtaggtacaatcttgacagttacatgaggttagattctgca
gccatgagggcacttaatgtcttagaaagcaaaactgatgcaaacaaaaatttcagtttg
tttggtctcatgaataggacctgtacagctggaatgggaaaacggttattaaacatgtgg
ttaaagcagccattagtagatgtaaatgaaattaactccaggttggatgtagtacaagca
tttgtagaggacactgtgcttcgccaagatctgaggcagcatctgaaaagaatatcagac
attgagcgactggtgcacaatcttcagaagcgaagagctggtctgcaacatgttgttaaa
ctttatcagtcaagcataagactgccttacattaaaagtgctctggacaggtatgatgga
cagttttcttcaatgatgaagagcaggtatttgaaagatttggagttatggactggtgct
gatcgcctaaataaatttattgagctagtagaaactgctgttgaccttgattatctggag
aatggggaatacatgatttcttcaagttatgactctgcactaactgaacttaaggagcag
caagaattactagatagccaaatacatgacttgcacagacaaactgctgttgatcttgat
ctggttgtagataaggcattaaagttagataagggcacacaatttggacatgtttttaga
atcacaaagaaggaggagccgaaaataaggaaaaagctcaacacccagtttattgtactg
gaaacccgtaaagatggagtgaagtttaccaacacaaagctcaaaaaattgggggacaaa
tatcaacaaattcttgaggagtacaagagctgtcaaaaacagttggttaataaagtagtt
gaactttcagcaactttttctgtggtgtttgaatctttagctgaattaatttcagaattg
gacgtgttactaagctttgctgatttggcttctagttgtcctactccatatacaagaccc
gacatcacctcatcggacacaggagatattgttttagaaggtagcagacacccctgtgtg
gaggcacaagattgggtgaattttataccaaatgattgtaagcttatcagaggaaaaagt
tggtttcaaataataacaggacctaacatgggtgggaaatcaacattcatccggcaggtg
ggcgtgaatattttgatggcgcaagttggttgctttgttccatgtgacaaagccagcata
tctgttcgtgattgcattttcgctcgtgttggtgcaggtgactgccaacttcgtggaatt
tctacctttatgcaagaaatgctcgaaacttcatcaatattaaaaggagctaccgacaag
tccttgataatcattgatgagttggggcgtgggacatcaacttacgatggatttggtcta
gcttgggccatttgtgagcacatagttgacgtgataaaagcacctactttatttgcaact
cactttcatgaactgactgcattagcccatgaaaatgatccacataaacaaattgttggt
gtggcaaattaccatgttagtgcacatattgatgcatctactcgcaagctaactatgcta
tacaaggttgaaccaggagcttgtgatcagagttttggtattcatgtcgccgagtttgca
aacttccctgaaagtgttgttgccctagctagagaaaaggcagcagaattggaagatttt
tcttcttctgctatttccttaattgattcttctacagaagaggtgggttccaagcgtaag
agagcatttgaacctgatgatatttctaaaggggctgcaaaggctcgccaaattcttgaa
gcgtttgttgctttgccactagacaccatggacaaaacgcaagctttgcaagaagttaag
aagttgaaagataatttagagaaggatgcacaaaactgtcactggttgcaaaaattcttg
tag
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