Trifolium pratense (red clover): 123924072
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Entry
123924072 CDS
T08949
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123924072
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123924072
Enzymes [BR:
tpra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123924072
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
123924072
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
123924072
NCBI-ProteinID:
XP_045832793
LinkDB
All DBs
Position
LG4:19692157..19709778
Genome browser
AA seq
1678 aa
AA seq
DB search
MAHASTSEGATNSVKSVTFSFITNEELIKTSSIKITNPILCNTLGEPVPGGLYDPALGPL
LDNLSICVTCGLSKANCSGHFGHIELVNPIYNPMMFPFLGDIINLTCFSCHHFKASRNEV
EKRATQLELILKGNISKSRSLNEIKLDDHEPVDSADDDDEGQCSSAEKPGGNWSSLQFSE
AMSVIKEFMKTKYKKCLNCGNYSPKITKPNFGWFHVKALKASQVRSNIITGNDASLASET
INDDISLGNRDCTEEEDIASGGTATSNAEKHNRKKLILFQQTSLAGSLLPSQVKQILEFL
WENEARLCSHISDIQDQGFGKKAGHSMFFLENIFVPPIRFRPPLRAGDKVADHPQTVLLN
KVLESNISLGDAHRNKSAASIVLDRWRGLQESVNLLFNNKTAKSQKDVAAGICQLLEKKE
GIFRQKMMGKRVNFACRSVISPDPYLAVNEIGIPPYFALRLTYPERVTPWNVVKLRDAVL
NGSETHPGATLYADKSSTIVLNKEKGGKRDSRIHTARRLQSTRGVIMHHGKIHDQEFEGK
IVYRHLKDGDVVLVNRQPTLHKPSIMAHVVRVLKGEKTVRMHYANCSTYNADFDGDEINV
HFPQDEISRAEAYNIVNANNQYMKPTSGEPLRALIQDHIVSAALLTKKDTFLSCEQFNQL
LYSSGVSMTGTGTFTCKPGQKISMSNSESEMFLFPPAIFKPEPLWTGKQVISALLRYITK
GRPPFTVEKNAKLPSSFFKTQMREEKKHTTDTSREKEEHEDKLLIYRNDLVRGVIDKAQF
GDYGMVHTVQEFYGSNTAGIFLSALSRLFTNFLQMHGFTCGVDDLLITEGKDSERIAELE
SCEIIGDKVHREFIGVMKDANIDPITMQLNVEKKIRSDGEAAAAHLDMQMISHLNDVTGK
KAVLKNLLSEGILKPSGKNCISLMTTSGAKGGMINFQQISSYLGQQTLEGKRVPNMVSGK
SLPCFPSWDCSPRAGGFITDRFLTALRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLI
KNLESLKVCYDHTVRDADGSIIQFHYGEDGVDVHQTSFVTKFEALSINEELVYSNCCRQL
DRSSPYINKLPDALKGGAENFIRDFSSKQRNSSSMKHADFLQLMEHKYVSSLAQPGEPVG
VLASQSVGEPATQMTLNTFHLAGRGEMNVTLGIPRLQEIVVAASNKIKTPFMTCPLRVGK
SKEDAERLADKMKKITVADIIERIKVTVVSITERDGQICHIYKLTMKLYKPIHYPKYTDV
TLEDWEDTLRVGFVRGLEDAIQNHIVLLGKISGIKDYKDKPNSSNGVKNDHSNESESNRN
DQANDDDDGDVDDNEDAEDLGFDAQKSKQQAMDEVEYEDGSEEETHDGEDDADRKGGKDG
NFEGVEHGKDEEDGKGDGDEDDSDIEVNGDDSDIDVSDNDKNVAIDANNSQGREETSKSE
KRKSEAEFKENDRRIYVKARGMRFEIHFKFPDAEPHILLAQIAQRTAKNVCIQNFGKVGQ
CKVITCKEAAVMYYGEDVGKRDDIPSLEKAKINALQTSGIHFKTFWEMQDDLNVRYIYSN
SVHDVLNTYGVEAAKEIIIREVKSVFKVYGITVNIRHLMLIADFMTHTGGYRPLTRKGIQ
DSTSPFVKMSFETASNFIVEAAYHGQVDTLETPSSRICLGLPVKMGTGCHDLIQKLEI
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atggctcacgcctctacttctgagggcgcaaccaattccgtgaaatctgttaccttcagt
ttcataaccaacgaagagttaatcaagactagtagcatcaagataaccaatcccattctc
tgcaataccctaggtgaacctgttcccggtggattatatgatcctgctttaggtccttta
ttggataatttatctatttgtgtaacatgtggtttgtctaaggctaattgctccggccat
tttggtcatattgagctcgttaaccctatctacaaccctatgatgttcccttttcttgga
gatattataaacttaacgtgtttctcttgccatcattttaaggctagtagaaatgaggtg
gaaaagcgggccacccagttggagctcattctgaaagggaatattagcaagtccagaagt
ttgaatgaaattaaactagatgatcatgaacccgtggattcagctgatgatgatgatgaa
ggccaatgtagtagtgctgagaaaccgggaggaaattggtcctcccttcaattttccgag
gcaatgtctgttataaaggagtttatgaagaccaaatacaagaagtgtctaaattgtgga
aactacagtcctaaaattactaaaccaaattttggatggtttcacgtgaaagctctcaaa
gcttctcaagtcagatcaaatattattacaggcaatgacgcatccttggcaagtgaaaca
atcaatgatgatatatctttaggaaatagagattgtacagaggaagaggatattgcctct
ggtggtactgcaactagtaatgcagaaaagcataatagaaaaaagctaatattgtttcag
caaacttcacttgctgggtctttgctaccctcccaggttaagcaaattctagagtttttg
tgggaaaatgaagctcggctgtgctcgcatatcagtgacatccaagatcaaggttttgga
aagaaagctggtcattcaatgttctttctggaaaacattttcgttccaccaatcagattc
cgtcccccattgagagcaggtgataaagtggcggatcatcctcaaactgttttgttgaat
aaggttttagagtccaacatatccttgggagatgcccatcgaaacaagtcagctgcatca
attgttctagatcggtggaggggtcttcaggaatctgtaaaccttctatttaacaacaaa
actgctaaaagccaaaaagatgtggctgctggaatatgtcagttgctggaaaagaaggag
ggcatctttcgccagaaaatgatgggaaaaagagttaattttgcatgccgctctgtcatt
tcaccagatccttatttagcagtcaatgaaattgggattcctccatattttgctctaagg
ttaacatatcctgagagagtgactccttggaatgtagttaagttgagggatgctgtccta
aatggttctgaaacccatccgggtgccacactctatgctgataaatcatcaacaattgtg
cttaataaagaaaaggggggaaagagggacagccgtattcatacagcaaggagattacaa
tccacaaggggggttattatgcatcacgggaagatacatgaccaggaatttgaaggaaaa
attgtgtatcgtcacttgaaggatggtgatgtagttcttgtcaatcgacagccaacactt
cacaaacctagcataatggcacatgtggtgcgtgttctgaagggggagaaaactgtacgc
atgcattatgcaaactgcagtacatacaatgctgattttgacggtgatgagattaatgtt
cattttccacaagatgaaatttcacgtgctgaagcttacaatattgtaaatgccaacaac
caatatatgaagcctacaagtggtgaaccactcagagccctgattcaggatcatattgta
agtgctgctcttctcacaaaaaaagatacctttttgagctgtgaacagttcaatcaactt
ctctacagttctggtgtatcaatgactggaacgggcactttcacttgcaaaccaggacag
aaaatttccatgtcaaactctgagagtgaaatgtttctgtttcctccagcaatattcaag
ccagagccattgtggacagggaaacaggttatcagtgctttgctacgctatatcactaaa
ggtcgcccaccatttactgttgagaagaatgcaaaactcccatctagtttttttaagact
caaatgagggaggaaaaaaaacacactacagatacatcaagagagaaggaagagcatgag
gataaattgttgatatatagaaatgatttggtgcgcggtgtaattgacaaggctcaattt
ggtgactatggaatggtgcatacggtgcaagagttttatggctcaaatactgctggcatt
tttctttcggcattaagtcggttattcacaaactttttacagatgcatgggttcacatgt
ggggttgatgatcttctgataacagaaggaaaggatagtgaaagaatagctgaacttgaa
agctgcgagataattggtgacaaagttcaccgtgaattcattggtgtcatgaaggacgct
aatatagatccaatcacgatgcagttgaatgttgagaaaaaaatacgcagtgatggagaa
gcagccgcagcacacttagatatgcagatgataagtcatcttaacgatgtaactggcaaa
aaagccgtattgaagaacttactatctgaaggaatattaaaaccctcaggaaaaaattgc
atttctctgatgactacatctggagctaagggtggtatgatcaacttccagcagatatct
tcttatcttggccaacaaacgcttgaaggaaaacgagtcccaaatatggtttctggaaag
tccttaccttgctttccatcatgggattgttccccaagagcaggagggttcattactgat
cggtttcttacagctcttcgtccacaggaatattactttcattgtatggctggtcgggaa
gggcttgttgacactgcagtcaaaacatctaggagtggttacctgcaaagatgtctaata
aaaaaccttgagtctcttaaagtttgttatgatcatactgtccgtgatgctgatggttca
attattcagtttcattatggagaagatggtgtggatgtccatcaaactagctttgtcacc
aagtttgaagcattgtcaattaatgaagaattggtttacagcaactgttgccgtcagcta
gatagatctagtccttatattaacaagttgcctgatgctcttaaaggaggagcagaaaac
ttcattcgcgatttctcttcaaaacagagaaattccagttcaatgaaacatgcggatttc
ctgcagttaatggagcacaagtacgtctcaagtcttgctcaaccaggtgaaccagtaggt
gttttagcttctcagtctgttggagaaccggcaacacagatgactttgaatactttccac
ttagctggtcgaggtgaaatgaatgtgactctcggaattccacgtttgcaagagattgtg
gtggcagcatccaacaaaatcaagactccctttatgacatgccccctgagggttggtaaa
tctaaggaagatgctgaacgccttgcagataaaatgaaaaagatcactgtagctgacata
attgagagaataaaagtgactgttgtatcaattactgaaagagacggtcagatttgccat
atatataagcttacgatgaagctttataaacctatacactatccaaaatacactgatgtt
acacttgaagactgggaggacactcttagagttggctttgtgagggggttggaggatgcg
attcaaaatcacattgtattgctgggtaaaattagtggcataaaagattataaagacaaa
ccgaattcttcaaatggtgtaaaaaatgatcatagcaatgaatcagaatctaacagaaat
gatcaagctaatgatgacgatgatggcgatgttgatgacaatgaggatgctgaagatctt
ggttttgatgctcaaaagagtaaacaacaagctatggatgaggtcgaatacgaagatggc
tctgaagaggagacgcatgatggtgaagatgatgcggatcgaaaaggtggcaaggatggg
aactttgagggtgttgagcatggcaaagatgaggaagatggtaaaggtgatggggatgag
gatgacagtgatattgaagtaaatggggatgacagtgatattgatgtaagtgataatgat
aaaaatgtggcaattgatgcaaataactctcaaggacgtgaagaaacgtcgaaatctgaa
aagagaaaatctgaagctgaatttaaagaaaatgacaggagaatttatgtgaaagctcgg
gggatgcgttttgagatccactttaaatttcctgatgctgaacctcacatattattggct
cagattgctcagagaacagccaagaatgtttgtatccagaactttggaaaggttggccaa
tgtaaagttattacatgtaaagaagctgctgtaatgtactatggtgaagatgttggtaaa
agggatgatattccgtcacttgagaaagcaaaaataaatgcccttcaaacgtctggtata
cattttaaaacattttgggagatgcaggatgatcttaatgttaggtatatttattcaaac
agcgtgcatgatgtactaaacacctacggggtggaagctgccaaagaaatcatcatcagg
gaagtgaaaagtgttttcaaggtttatgggataacagtaaacatccgacacttgatgctt
attgctgactttatgacacacacaggtgggtatcgccctctgaccagaaaggggatacaa
gattctacatcccctttcgtcaaaatgtcttttgagacagcatccaacttcattgttgaa
gcagcttatcacggtcaggtggacaccttggagactccttcttctagaatttgtcttggt
ttgccggtgaagatgggaactgggtgccatgatttgatacagaagctagaaatatga
DBGET
integrated database retrieval system
