Trifolium pratense (red clover): 123924628
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Entry
123924628 CDS
T08949
Name
(RefSeq) protein SMG7-like
KO
K14409
protein SMG7
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123924628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123924628
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
123924628
mRNA cycle factors
Common to processing body (P body) and stress granule
123924628
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
123924628
NCBI-ProteinID:
XP_045833530
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All DBs
Position
LG4:complement(39900834..39907246)
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AA seq
977 aa
AA seq
DB search
MMIVEMDKMSAPSSRERAQRLFDKNIELEKKRHISAQAQVPSDPNIWPQLRENYEAIILE
DHAFSEKNGIEFALWQLHYKRIEELRKYFNAARTSASSKSSQGGKGSVRPERVTKIRLQL
KTFLSEATGFYHDLIMKIKSKYGLPLGYFEDSENRIVMEKDGKKSAEMKKSLISCHRCLI
YLGDLARYKGLYGEGDSTKREFTAASSYYLQAASIWPSSGNPHHQLALLASYSGDDLATI
YRYFRSLAVDSPFTTARDNLIVAFEKNRQSYCQLSGDVKAVAVKESSGQLAGRGRGKVEA
KLVTRGNGVEASPKNKGASNIQETYKSFCTRFIRLNGILFTRTSLETFTEVLSLISTGLR
ELLSSGQDEELNFGQDTLENGLAIVRIISIIIFTVHNVNKESEGQTYEEIIQRAVLLQNA
FTAAFELMSIIIERCVQVKDPSCSYLLPGILVFVEWLACYPNHAAANDVDENQATVRSKF
WNHCISFWNKLLSVGSVSIEDDEEDTCFNNMSKYEEGETENRLALWEDFELRGFVPLLPA
QTILDFSRKHSLGSDGEKERKARVKRILAAGKALANVVRVDQKMIYFDSKGKKFIIGVEP
RISNDYVLVSGIPVVDDLLEENAADKPKVGIVQPDHHQYVEEEDDDEVIVFKPIIAEKRT
NVAVVSSGASHKGLESIPKASGGDIKFNVDPTFNTANDVNHQMFLPASVSSMMPQHLQPV
QQHSSRCPEEGMSLANIFEGLGFLENGHVVKPNFPPHEAVSTFNHASLTVPNQQSVSTGT
SSFYGISKAEDLMIPSNVDTFASSGVITNNSYVNPSSVLQTGLKKSPVSRPSRHLGPPPG
FSHVSPKLDMESTVPDSINGNPVMDDYSWLDGYQLPSSTKGLAPNGPITYTQSNSQQVNN
NILSGTASFPFPGKQVPSALQGPIQNGWQDYHTSELLKAHHQQQLQPQQPLANGNQHFTP
LPEQFQGQSIWTGRYLV
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgatgatagtagagatggataaaatgtctgctccttcatcgcgggagcgtgcacaacgc
ctttttgacaagaacattgaattggagaagaagcgccatatatcagctcaagcacaggtc
ccgtcagatccaaatatttggccacagttgcgtgagaattatgaagcaataattctcgag
gatcacgctttttccgagaagaatggtattgagtttgctctttggcaattgcattacaaa
cggattgaagaattaaggaaatatttcaatgctgctcgtacttctgcaagctcaaaatca
tctcagggcgggaaaggttctgtacgacctgagcgggtaactaaaataaggctgcagttg
aagactttcctttcagaggcaactggattttaccatgatcttatcatgaaaatcaaatca
aagtatgggcttcctcttggttactttgaggattcagagaatcggattgtgatggagaaa
gatggaaagaaatctgctgagatgaagaaaagtttgatatcttgtcatcgttgtttgata
tacttaggtgatcttgctcgctacaaaggattgtatggtgaaggtgattcaacaaagcgt
gagttcacagcagcttctagttactatttacaagctgcgtctatttggccttcaagtgga
aatccccaccatcagctggctttgttggcttcatattctggcgatgatctggcaactatt
tatcgttattttcggagtctggctgtggatagtccatttacaactgctagagataattta
attgttgcatttgagaagaatcgtcaaagttactgtcagctttctggtgatgttaaagct
gtcgcagtcaaggaatcttctgggcaattagctggcagaggaagaggaaaagtagaagca
aaacttgtgacaaggggtaatggcgtggaagccagtcctaaaaacaaaggagcatccaat
atacaagagacttacaaatccttctgcactcgattcatccgtctaaatggaatcttgttc
actcgtacaagccttgagactttcactgaagttctctctcttattagcactggcctgcgt
gagcttctgtcatcaggtcaagatgaagagctgaattttggccaggatactcttgagaat
ggtcttgccattgtcagaataatttccattatcatcttcacagttcataatgtgaataag
gaatctgaaggtcaaacttatgaagaaattatacagcgtgctgttctacttcagaatgca
ttcactgcagctttcgaactgatgagtattataattgagagatgcgtccaggtgaaggat
ccctcttgtagctatcttttaccaggcattttggtttttgttgaatggttggcatgttat
cctaatcatgctgctgccaatgatgtggatgagaatcaagcaactgttagatcaaaattt
tggaatcattgtatttccttctggaacaaactactttcagttgggtctgtgtctattgaa
gatgatgaagaggatacttgttttaataacatgagtaagtatgaagaaggggaaactgaa
aatcgacttgctttgtgggaggactttgagttaagaggatttgttccacttctccctgca
caaacaatcttggatttttcaaggaagcattcccttggaagtgatggtgaaaaagaaaga
aaagcccgggtaaaaaggattttagctgcaggaaaggctttagcgaatgttgttagggtt
gatcagaaaatgatatattttgactcaaagggaaagaaatttataattggtgttgagcct
cgtatctcaaatgattatgttcttgtctctggcatacctgttgtagatgatttattggaa
gaaaacgcagcagacaagccaaaggtaggtattgttcagccagaccatcaccagtatgtg
gaagaagaggatgatgatgaggttattgtttttaaacctataatagccgagaagcgaacc
aatgtggcagttgtctcatcaggtgcatcccacaaaggcttagagtctatcccaaaagct
tctggaggggatataaaatttaatgtcgatcctacttttaacactgccaatgatgtgaac
catcaaatgtttttgcctgcttctgtcagttctatgatgcctcaacacttgcaaccagtt
cagcaacattcttcaagatgcccagaggagggaatgtctctggccaacatttttgaaggt
cttggcttcttggagaatgggcatgttgtgaaacctaatttcccaccgcatgaagctgta
tcaacctttaaccatgcctcacttacagttcctaatcagcaatctgtaagtactggtact
agctcattttatggtatctcaaaagctgaagacttgatgataccatccaatgttgatact
tttgcatcttctggagtcattacgaataactcttatgtgaatccatcatcagtattgcaa
actggtttgaaaaaatctccagtcagccgtccttctaggcaccttggacctcctcctggc
ttcagtcatgtttctcctaagctagacatggaatctactgttcccgattcaattaatgga
aatcccgttatggatgactacagttggttggatggatatcagttgccttcatccaccaaa
ggtttagcccccaatggtcctattacttacactcaatcaaattcccagcaagtaaataac
aatattttgagtgggacagcttcctttccctttcctggaaaacaagttccatctgcactg
caggggcccatacagaatggttggcaagattatcatacttccgagcttttaaaagctcat
catcaacagcaactgcagccacaacaaccactcgcaaatggaaatcaacattttactcca
ctgcctgagcaatttcaaggacagtcaatctggacaggtcgttacttggtgtga
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