Trifolium pratense (red clover): 123924873 Help Entry 123924873         CDS       T08949                                  Name (RefSeq) symplekin isoform X1   KO K06100   symplekin Organism tpra  Trifolium pratense (red clover) Pathway tpra03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:tpra00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     123924873  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:tpra03021]     123924873    03019 Messenger RNA biogenesis [BR:tpra03019]     123924873 Transcription machinery [BR:tpra03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      123924873 Messenger RNA biogenesis [BR:tpra03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      123924873     U7-dependent histone pre-mRNA processing factors      123924873 SSDB OrthologParalogGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N HEAT_2 HEAT_EZ CRM1_C Adaptin_N Motif Other DBs NCBI-GeneID:  123924873 NCBI-ProteinID:  XP_045833806 LinkDB All DBs Position LG4:complement(6932850..6946703) Genome browser AA seq 1385 aa AA seqDB search MVGKSMTVTSREKLASLMHSAKLAIDIPSKLELLRKLKNELPQEDPVILTEFLPPLFDFL SDRFSPVRKFVTEMVGEIGLNNTEFLPDIVPMLIDILDDDTPAVVRQAILCGIDLFSSTL EKIAIQGLYSSELESALESAWECMLKFKDKVYSIAFQNGRSGAKLLALKFVEAVIRLYTL DPNGSTEPTSHHGKPPVFNVSWLRRDHPALNIGDLSMEASNSLGLLLDQLRFPTVKSLSN SVIIVLIKSLSAIAIDRPAFYGRILPVLLSLEPSSSVVSGVCVSAAHLALKKAFLTCTKC THPSAAPWRDRLAGALKEMQSEGKADQVFHPISASNGSILQREEDYHPVIKEEDASVSSF DSGHINLGRKRPGSQNGGDLAQDADGPGKRVKTITDVLKKPKKELDESTANIQDDTPSSV PASSKGDVDNGPVQQLVAMFGALVAQGEKAVASLEILISSISADLLAEVVMANMRYLPPN CPNAEGNDEQLHDISIFGSHDKAKYPQSFVAGVMSLSSTFPPVASLLDAHRSVSNDLVKS HEEEEISSPGVDSSAMNSGMILSSQNAPSPTDFPSSDTYIPGVENVSTPLPDIDDVGNLE SGIPGLDSFGRIDALSETLAPSSLVSTDMQIEDASQEQVTSLDNRSPLNSVPSVSADKSE ELSPKAVATDVNSLVSSTATSVVLPARLVLPKMIAPVVDLADEQKDHLQISCFMRIIDAY KQISLAGGSKVRFSILAYLGVEFPLELDPWKLLQKHILIDYSSHEGHELTLRVLYRLFGE AEVEPDFFSSTTAASVYEAFFLAVAEALRDSFPPSDKSLSKLLGESPYLPKSVLKMLENM CSPGNGDKAENESNTLNADRVTQGLSAVWSLILLRPPIRDACLKIALQSAVHHLEEVRMK AIRLVLKHIFPLMNLIDCIKPLVLYFWLFLQVANKLYPLSPISKQIEDFAKEMLFSVMSG DASETTDAEGSIADAQKGPDIEKLTNEPVSLSGSTKDVSDNRQLSTSEGTSSLSISEAQR GMSLYFALCTKKHSLFREIFVIYRSTSKAAKQAIHRQIPILVRTLGSSSHLLEIISDPPS GSEDLLMQVLRTLTDGTIPSKDLIFTVKRLHDSKLKDAEVLIPILPFLPKDEVMPVFPNI VNLPSEKFQGALGRLLQGSSQSGPVLTPAEVLIAIHGIDPERDGIPLKKVTDACNACFEQ RQTFTQEVLAKVLNQLVEQIPLPLLFMRTVLQAIGAFPTLVDFIMGILARLVKKQIWKYP KLWVGFLKCLQLTKPQSFGVLLQLPPPQLEVALNKIAVLKAPLIAHASQPDIQSSLPRSV LVVLGIVSDSQVSSQPQTSHTQTSQPQTSQPQTSQPQTSQTQTGETSNSDKDTMTEKSKE SSTAS NT seq 4158 nt NT seq  +upstreamnt  +downstreamnt atggttggaaaatccatgactgtcacttcacgcgaaaagctcgcaagtctcatgcattca gccaaattggccattgatataccttcaaagcttgaattattgcgtaaattgaagaatgaa cttcctcaggaagaccctgttattctcactgagttcctccccccgcttttcgatttcctc tccgatcgtttcagtcctgttcgaaaattcgtcactgagatggttggtgaaattggattg aataacactgaattcttgcctgatattgtgcctatgttgattgatatcttggatgatgat acaccggcggttgttcgccaagctatactgtgtggaattgatttgtttagttccacactc gagaaaattgcgattcagggtctatattctagtgagttagaaagtgcacttgaatctgca tgggagtgtatgcttaaattcaaagacaaagtatactcaatagcatttcaaaatggaagg agtggagcaaagctgctggcactgaagtttgttgaagcagttattcgtctttacacactt gatcctaatggttccacagaaccgacttctcatcacggaaagccaccggtatttaatgta tcatggctgaggcgggatcatcctgcacttaacatcggagatttgtcaatggaagccagt aatagtttgggtctcttgcttgatcaactcaggtttccaactgtgaagtctcttagtaac tcagtaatcattgtgctaattaaaagcctttcagccattgccatagacaggcctgcattc tatggccgtatcttgccagttttgctcagtttggaaccctctagctctgttgttagtggg gtctgtgtgtctgcagcgcatcttgctctaaagaaggcctttcttacgtgcacgaaatgt acacatccaagtgctgccccgtggagagatcgtttggctggtgccttgaaggagatgcag tctgaagggaaggcagatcaggtgttccatccaatctctgcaagtaatggaagtatatta cagagagaagaggattatcacccagttatcaaggaagaggatgcttcagtaagttcgttt gattcagggcacattaatctgggaagaaaacggccaggatctcaaaatggtggtgattta gctcaagatgcagatggtcctggaaaacgtgttaaaacaataaccgacgttttgaaaaaa cctaaaaaggagttagatgaaagtactgctaacatacaagatgacactccttcgtctgta ccagcatcttcaaaaggagatgtggataatgggcctgtacagcagcttgttgccatgttt ggtgctttggttgctcaaggtgaaaaggctgttgcgtctttggaaattcttatctcaagt atttctgctgacttactagcggaggtggtgatggcaaatatgcgttatctacctccaaat tgccctaatgctgaaggaaatgatgaacagttgcatgacattagtatatttggttctcac gacaaggctaagtatccacaatcatttgtggctggtgttatgtcactttctagtactttc ccacccgttgcttcacttcttgatgctcatcgatcagtgtccaatgatttagtgaagtct cacgaggaggaagaaatttcttcacctggagtagatagtagtgccatgaattctggcatg attctttcatctcaaaatgcaccatcgcctactgattttccatcttcggatacttatata cctggagtagagaatgtcagcacacctctgcctgacatagatgatgttggcaacttagag agtggaatccctggcctggattcttttggtcgaattgatgcattgtcagaaactttggcc ccttcttcattggtttccactgatatgcaaatagaagatgccagtcaagagcaggttacg agtttggataataggtcacccttgaactcagttccatcagtatcagcagataaatctgaa gagctgagcccaaaagcagttgctacagatgtcaatagcttggtgtcctcaacagctact tcagttgtgttgcctgcgcgtctagtcttgccaaagatgattgctccagttgttgatctt gcagatgaacaaaaggatcatttgcaaatatcatgttttatgcgtatcattgatgcatat aagcaaatatctctagctggaggctcaaaagttcgattttcgatacttgcttatttagga gtcgagtttcctttggaattagacccgtggaaattgttacaaaagcatattttgattgat tactctagtcatgagggacatgagttgacattgcgtgtcctctacaggttatttggtgag gctgaagtggagcctgacttcttttcttccacaactgcagcttctgtatatgaggcattc ttcctagcagtggcagaagcacttagagattcttttccaccttcggataaatcattaagc aaactgctcggtgaatctccttatttgccaaaatcagttttaaaaatgttagagaacatg tgttctcctggaaatggggataaagctgaaaatgaatcaaacacattgaatgcggataga gtcactcaaggtctaagtgctgtatggagtttgattcttttaaggcctcctattcgagat gcttgtttaaaaattgctttacagagtgcagtgcatcacttggaagaagtgcgtatgaaa gcaatacgcctggtacttaagcatattttcccgttgatgaatttaattgactgcataaaa ccacttgtcttatacttttggctcttcttgcaggtagcaaataaactttatcctttatca ccaatttctaagcaaatagaagattttgcaaaggaaatgttgttctcagtgatgagtggt gatgcttctgaaactactgatgctgaagggtccattgctgatgcacagaagggacctgat attgaaaagcttacaaatgaaccagtatctttgagtggcagtactaaggatgtctcagat aatcgacaattaagcacatctgaaggcacctcatcactttcaatttctgaggctcagaga ggcatgtcactgtattttgccttgtgcacaaagaaacactctctctttcgcgaaatattt gtcatctatagaagcacatcaaaagcagcaaagcaggctattcatcgtcagattcccata ctagtgcgtacattgggttcatcttcacatctccttgaaattatatcggatcccccaagt ggaagtgaggatctcctaatgcaggtgttgcgtacactcactgatggtacgatcccgtct aaggatttgatatttactgtgaaaaggttacatgattcaaaacttaaggatgcagaggtt cttattccaatattgccattcctaccgaaagatgaggtaatgccggtttttcccaacatt gttaacctgccttcggagaagttccaaggagcacttggtcgtctattgcagggatcatca caatctggtccagtgcttacaccagctgaagtattaattgctattcatggaattgatcct gaaagagatggaattcccttaaaaaaggtaactgatgcatgcaatgcttgctttgagcaa cgacaaacttttactcaagaagttcttgccaaagttttgaatcaattggttgagcaaatt cctcttcctttactgttcatgcggacagtattacaagcaataggtgcttttccgacactg gtggacttcatcatgggtattcttgctcgccttgtaaagaaacagatatggaagtaccca aagttgtgggtgggattcttgaagtgtttgcaattgacgaaacctcagtcatttggtgtt ttgcttcagctacctccaccgcaattggaagttgcattaaataaaattgctgtactgaag gcaccattgattgctcatgctagccagccagatatacaatcatcacttcccaggtctgtg ctggttgttcttggcattgtttccgattcacaggtttcaagtcagccacaaactagccat acacaaactagccagccacaaactagccaaccacaaactagccaaccacaaactagccaa acacaaacaggtgagacaagcaactcagataaggacacaatgacagaaaaatccaaagaa tcatctacagcgagctaa

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