Trifolium pratense (red clover): 54614122
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Entry
54614122 CDS
T08949
Symbol
rpoB, HJE17_pgp023
Name
(RefSeq) RNA polymerase beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
54614122 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
54614122 (rpoB)
03400 DNA repair and recombination proteins [BR:
tpra03400
]
54614122 (rpoB)
Enzymes [BR:
tpra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
54614122 (rpoB)
Transcription machinery [BR:
tpra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
54614122 (rpoB)
DNA repair and recombination proteins [BR:
tpra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
54614122 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-GeneID:
54614122
NCBI-ProteinID:
YP_009772743
UniProt:
A0A0A0QEA5
LinkDB
All DBs
Position
Pltd:complement(82255..85467)
Genome browser
AA seq
1070 aa
AA seq
DB search
MHGIGNEGMSTLPGLNQIQFEAFCRFIDRGLTEELLKFPKMEDMDQEIFFHLFVETYQLV
EPSIKEKDAVYKSLTYSSEFYISAELIWKNSRTIREQIIFLGNIPIMNSLGTSIVNGIYR
VVINQILQSPGIYYRSELDHNGISVYSGTIISDWGGRLELKMDRKARIWARVSRKQKISI
LVLSSAMGSNLSEILENVCYPEIFLSFLNEEEKEKIGSKENAILEFYRQFACVGGDPIFP
EFLCEELQKKFFQQRCELGGIGRRNMNRRLNIDIPENNPFLLPRDILTAADHLIGMKFGM
GTLDDMNHLKNKRIRSVADLLQDQFGLALVRLEHIIKRTISGAIRYKWIPTPQNLLTSTP
LTTTYQSFFGLHPLSQVLDRTNPLTQIVHGRKWSYLGPGGLTGRTASFRIRDIHPSHYGR
ICPIDTSEGINVGLIGSLAIHARIGRWGSIESPFYEISERSKRIRMLYLSPSRDEYYMVA
TGNYLALNRDIQEEQIVPARYRQEFLTIAWEQVHLRSIFPFQYFSIGASLIPFIEHNDAN
RALMSSNMQRQAVPLSRSEKCIVGTGLERQVALDSGVAAIAEHEGKIVYKDTDKIVLFGN
GNALSIPLIIYQRSNKNTCMHQKSQVQKGKCVKKGQILADGAATVGGELALGKNVLVAYM
PWEGYNSEDAVLISERLVYEDIFTSFHIQKYEIKTHVTSHGPERITNKIPHLEAHLLRNL
DKNGIVILGSWVETGDILVGKLTPQMANESSYAPEDRLLRAILGIQVSTSKETCLKLPIG
GRGRVIDVRWIHKKEGSSYNRETIQIYISQKRKIKVGDKVAGRHGNKGIVSKILSRQDMP
YLQDGRPVDMVFNPLGVPSRMNVGQLLECSLGLAGSKLNRHYRIAPFDERYEQEASRKLV
FSELYEASKETSNPWIFEPEYPGKSGLFDGRTGNPFEQPVIIGKPYILKLIHQVDDKIHG
RSTGHYALVTQQPLKGRAKQGGQRVGEMEVWALEGFGVAHILQEMLTYKSDHIKARQEVL
ETTIIGGTIPKPVDAPESFRLLVRELRSLALELNHFLVSEKDFQMQRKEV
NT seq
3213 nt
NT seq
+upstream
nt +downstream
nt
atgcatggcattgggaatgaaggaatgtctacactacccggattgaatcaaatacaattt
gaagcattttgtagattcattgatcggggcttaacagaagaacttttgaagtttccaaaa
atggaggatatggatcaagaaattttttttcatttatttgtggaaacatatcaattggtg
gaaccctcgataaaagaaaaagatgctgtatataaatcacttacatattcctctgaattc
tatatatccgcggaattaatttggaaaaacagtaggactatccgagaacaaattattttt
cttggaaacattcctataatgaattccttgggaacttctatagtaaatggaatatacagg
gttgtaatcaatcaaatattgcaaagccctggtatctattatcgttcagaattggaccat
aacggaatttcagtctatagtgggacaataatatcagattggggaggaagattagagtta
aaaatggatagaaaagcaaggatatgggctcgtgtaagtaggaaacagaaaatatctatt
ctagttctatcatcagctatgggttcaaatttaagcgaaattcttgagaacgtttgctac
cctgaaattttcttgtcgttcctcaatgaagaggagaaggaaaaaatagggtcaaaagaa
aatgccattttggagttttatcgacaatttgcttgtgtaggcggagatcccatattccct
gaatttttatgtgaggaattacaaaaaaaattttttcaacaaagatgtgaattaggagga
attggtcggcgaaatatgaaccgaaggctgaatattgatatacctgagaacaatccattt
ttgttaccgcgagatatattgacagctgcggatcatttgattggaatgaaatttggaatg
ggtacacttgacgatatgaatcatttgaaaaataaacgtattcgttccgtagcagatctc
ttacaagatcaatttgggttggctctcgttcgtttagaacatataattaaaagaactata
tctggagcaattagatataaatggataccgacccctcagaatttactgacttcaactcca
ttaacaaccacttatcaatctttttttggattacacccattatctcaagttttagatcga
accaatcccttgacccaaatagttcatgggagaaaatggagttatttgggtcctggggga
ttgacggggcgaactgctagttttcggatacgggatatccatcctagtcactatggacgc
atttgtccaattgacacctcggaaggaatcaatgtcggacttattggatccttggcaatt
cacgcaaggattggtcgttgggggtctatagaaagtccattttatgaaatttcagagaga
tcaaaaagaataagaatgctttatttatcaccgagtagggatgaatactatatggtagcg
acgggaaattatttagcactgaatcgagatattcaggaggagcagattgttccagctcga
taccgtcaagaatttctgactattgcatgggaacaggttcatcttcgaagtatttttccc
tttcaatatttttctattggagcttccctcattccttttatcgagcataatgatgcgaat
cgagctttaatgagttctaatatgcaacgtcaagcagttcctctttctcggtccgaaaag
tgcattgttggaactggattggaacgccaagtggccttagattcaggagtggccgctata
gccgaacacgagggaaagatcgtttataaggatactgacaagatcgttttatttggaaat
gggaatgctctaagcattccattaattatatatcaacgttcgaacaaaaatacttgcatg
catcaaaaatcccaggttcaaaaaggtaaatgcgtaaaaaagggacaaattttagcagat
ggtgctgctacggttggtggggaactcgctttgggaaaaaacgtattagtagcttatatg
ccatgggaaggttacaattctgaagatgctgtactcattagtgagcgtctggtctatgaa
gatatttttacttcttttcatatacagaaatatgaaattaagactcatgtgacaagccac
ggtcctgaaagaatcactaataaaattccgcatctagaagcccatttactccgaaattta
gacaaaaatggaattgtgattctgggatcttgggtagaaacgggcgatattttagtgggt
aaattaacgccccaaatggcgaacgaatcctcatatgccccggaagatagattattacga
gctatactaggaattcaggtatccacctcaaaggaaacttgtctaaaactacctataggt
ggtaggggccgagttattgatgtgagatggatccacaaaaaagaaggttctagctataat
cgagaaacaattcaaatatatatttcacagaaacgtaaaatcaaagtaggtgataaagtg
gccgggagacatggaaataaaggtatcgtttcaaagattttgtctagacaggatatgccc
tatttgcaagatggaagacccgttgatatggtcttcaatccattaggggtaccctcacga
atgaatgtaggacagctattggaatgctcactcggattagctgggagtaagctaaataga
cattatcgaatagcaccttttgatgagagatatgaacaagaggcttcccgaaaacttgtg
ttttctgaattatatgaggccagtaaagaaacatcaaatccatggatatttgaacccgag
tatccgggaaagagcggactatttgacggaagaacggggaatccttttgaacagcctgtt
ataataggaaagccttatatcttgaaattaattcatcaagttgatgataaaatacacgga
cgttccactggacattatgcactcgttacacaacaacctcttaaaggaagggccaaacaa
ggaggacaacgggtaggcgaaatggaggtttgggccctcgagggattcggtgttgctcat
attttacaagagatgctgacttataaatccgatcatattaaagctcgtcaagaagtactc
gaaactacgattattggaggaacaatacctaaacctgtggatgctccagaatcttttcga
ttgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgag
aaagacttccagatgcaaaggaaggaagtttaa
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