Trichogramma pretiosum: 106654682
Help
Entry
106654682 CDS
T07644
Name
(RefSeq) superkiller viralicidic activity 2-like 2
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tpre
Trichogramma pretiosum
Pathway
tpre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
106654682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpre03019
]
106654682
03041 Spliceosome [BR:
tpre03041
]
106654682
03009 Ribosome biogenesis [BR:
tpre03009
]
106654682
03016 Transfer RNA biogenesis [BR:
tpre03016
]
106654682
Enzymes [BR:
tpre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106654682
Messenger RNA biogenesis [BR:
tpre03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
106654682
Spliceosome [BR:
tpre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
106654682
Complex C
U4/U6.U5 tri-SnRNP related factors
106654682
Ribosome biogenesis [BR:
tpre03009
]
Eukaryotic type
Pre-60S particles
Helicases
106654682
Transfer RNA biogenesis [BR:
tpre03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
106654682
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
106654682
NCBI-ProteinID:
XP_014230144
LinkDB
All DBs
Position
Unknown
AA seq
1000 aa
AA seq
DB search
MDLFDAFEETAEENDTNDVEILDSSVGPVKRENEEAPETENYTKRIKVDDLFESSKIEEI
ESRITVHTIQTIESCTHEVAIPSDYTYLPLEQKTTKPAKEYKFVLDPFQKEAILCIENDQ
SVLVSAHTSAGKTVVAEYAIACSLREKQRVIYTTPIKALSNQKYREFYEEFKDVGLVTGD
VTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVWEETLILLPD
NVHYVFLSATIPNARQFVEWVAYLHHQPCHVVYTDYRPTPLQHYIFPAGGDGIHLVVDEG
GNFKEETFNKAMACLQGDAAKGDTKGRKGGLHKTNSGQTNIFKIIKMIMERNFAPVIIFS
FSKKDCELYAMQLSKLDLNSAEEKQLVDEVFNNAMDVLSEDDRKLPQVENVLPLLRRGIG
IHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKDFRWIT
SGEYIQMSGRAGRRGLDEKGIVILMIDEQVSPVVGKEIVQGKADPINSAFHLTYNMVLNL
LRVEEINPEYMLERSFYQFQNQASIPELLKNVKELEKEYNEVQIENIDVMTSYHDLRVQL
DTLSAEFRSYLTMPQYLVPFLQPGRMVKIKNDKYEFDWGIILNFKKKGNEKTETHYVVDI
LLNIASDSTDLAPVPCPPDSKGEMEVVPVMHTLIHQISSLRLYIPADLRTSDQRRSVLKT
LLEVKKRFPDGPPLLNPLTDMKIDNPAFSDIVKRIKSLEERLFVHPAHKDPELSVLYEKF
LSKNEIAKKLDASRESLKQAKSVLQMDELKSRKRVLRRMGYCTLADVIEVKGRVACELNG
ADELLMTEMMFNGLFNSLTVPQMTALVSCFVCDDKSSEMPKMIEELSGPLRQMQDIARKI
AKITTESNLDLDEDAYVERFKPYLMDVVYSWCNGATFLEICKMTDIFEGSIIRCMRRLEE
VLRQLVQASKNIGNTDLEVKFSEAIRLLKRDIVFAASLYL
NT seq
3003 nt
NT seq
+upstream
nt +downstream
nt
atggatttatttgatgcttttgaagaaactgcagaagaaaacgacactaatgatgttgaa
atattagacagttctgttgggccagttaagagagaaaatgaagaagctcctgaaactgaa
aattacaccaaaagaataaaagttgatgatttatttgaaagttctaagattgaagagatt
gaatctagaatcacagttcataccatccaaaccatagaatcatgtacgcatgaggtagcg
ataccatcagattatacatacttacctctagaacaaaaaacaacaaagcctgcaaaggaa
tataaatttgtccttgatccttttcaaaaagaagctattttgtgtatagaaaatgatcaa
tcagtgcttgtatctgcacatacatccgctggaaaaacagttgtggcagaatatgccatt
gcatgttctttgagagaaaaacaaagagtaatctacacaactcccataaaggcattgagt
aatcaaaagtacagggaattttatgaagaattcaaagatgtaggattagtgactggtgat
gtaaccatcaaccctacagcaagtgttcttattatgactacagaaattcttcgaaatatg
ttgtatagaggttctgaggtcatgagagaagtaggttgggtaatttttgatgaaattcat
tacatgcgtgataaagaaagaggagtggtttgggaagaaacattaattttactaccagac
aatgttcactatgtctttttgtctgccactatcccaaatgctcgccagtttgttgaatgg
gtagcatatttacatcatcaaccgtgccatgttgtttacactgattatagaccaactcca
ttgcaacattatatttttccagcgggtggcgatggaattcatttggtcgtggatgaaggt
ggaaattttaaggaagaaactttcaacaaagcaatggcttgtctccaaggagatgcagca
aaaggtgacacaaaaggtcgcaagggagggctacataaaacaaactctggacagacaaat
attttcaaaataatcaagatgattatggagagaaattttgcaccagttatcattttttca
ttttccaaaaaagactgtgagctgtatgctatgcagctttcaaaactagatctcaatagt
gctgaagaaaaacaattggttgatgaggtattcaataatgcaatggatgtactcagcgaa
gatgatcgcaaactaccgcaggttgaaaatgttctgcctttattgaggcgaggaattggc
attcatcacggtggacttttgccgattttaaaagaaacagttgaaattttattcggtgag
ggattgataaaggcactgtttgccacagaaacttttgccatgggcttgaacatgccggca
agaacggtattattcactgccccgaggaaattcgatggaaaagatttccgatggatcaca
tcaggtgaatacattcaaatgtcaggacgtgctggccgaagaggcttggacgagaaaggt
atagttatattaatgatagatgagcaagtcagtcctgttgttggtaaagaaattgtacaa
ggaaaagctgatcctataaattcggctttccatttgacttataacatggtactgaatttg
ttaagggttgaagaaataaaccctgaatacatgttggaaaggagtttttaccaattccaa
aatcaagcatctattcctgaactattaaaaaatgtcaaagaattggaaaaagaatacaat
gaggtgcaaattgaaaatattgatgtcatgacatcatatcacgatttacgagttcaattg
gatactctaagtgccgaatttcgctcgtacttgacaatgccacaataccttgtacctttc
cttcaacctggtcgaatggtcaagatcaaaaatgacaaatatgaattcgactggggtata
atactcaacttcaaaaagaagggtaacgaaaaaacagagacacactatgttgtcgatatt
ttgttaaacatagcgtcggattctactgacctggcacctgtaccgtgcccacctgattcg
aaaggtgaaatggaagttgtccccgtaatgcacactttgattcatcagatcagttctctg
aggctgtatattccggcggatttaagaacatccgatcagagaagaagcgttttaaaaacg
ttattggaagtgaagaaaagattcccagatggtcctccgcttcttaatccactaacagat
atgaagatcgataaccccgcgtttagtgacatcgtgaaacgaatcaaaagtttggaagaa
cgattgtttgtccatccagctcacaaagatccagaattatcggtcttgtatgaaaaattc
ttgtccaaaaatgaaatcgccaaaaaattagatgcctcgagagagagcctgaaacaagcc
aagtcggtcttgcaaatggacgagctgaaatctcgcaaaagagtcttgcgacgtatgggc
tactgcacacttgccgatgtgatagaagtgaaggggcgcgtggcatgcgagctcaacggg
gccgatgagctcctcatgacggagatgatgttcaatggtctgttcaattcattgaccgta
ccccaaatgactgccctcgtgagttgcttcgtgtgcgacgacaagtccagcgaaatgcca
aaaatgatcgaggaactgagcgggcccctgcgacaaatgcaagacatcgcaagaaaaata
gccaaaattacgaccgagtctaatctggatttagacgaagatgcatatgtcgagcgattc
aagccctacttgatggatgtcgtttattcttggtgcaacggggcgacgtttttggagatc
tgcaaaatgactgatatattcgaaggctccataattcgttgcatgaggcgattagaagag
gtcttgcgacaattagttcaggcatccaaaaacattggaaatactgatttagaagtcaaa
tttagcgaagcaattagattattgaagcgagatattgtatttgcagcctcgttatatttg
taa
DBGET
integrated database retrieval system
