Trichogramma pretiosum: 106654973
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Entry
106654973 CDS
T07644
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like isoform X2
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
tpre
Trichogramma pretiosum
Pathway
tpre03020
RNA polymerase
tpre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
106654973
09124 Replication and repair
03420 Nucleotide excision repair
106654973
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpre03021
]
106654973
03400 DNA repair and recombination proteins [BR:
tpre03400
]
106654973
Enzymes [BR:
tpre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
106654973
Transcription machinery [BR:
tpre03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
106654973
DNA repair and recombination proteins [BR:
tpre03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
106654973
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
106654973
NCBI-ProteinID:
XP_014230672
LinkDB
All DBs
Position
Unknown
AA seq
1906 aa
AA seq
DB search
MATSDSKATVRTVKKVQFGILSPDEIRRMSVTERGIIYAETMEGGRPKLGGLMDPRQGVI
ERNSRCQTCAGNMTECPGHFGHIDLAKPVFHIAFITKTIKILRCVCFFCSKMLVSPQNPK
IKEIVMKSKGQPRKRLTFVYDLCKSKKICEGGDEMDINKDGLVLDPNKKLSHGGCGRYQP
NLRRSGLDITAEWKHVNEDTQEKKIALTAERAWEILRHITDEESFILGMDPKFARPDWMI
ITALPVPPLSVRPAVVMYGSARNQDDLTHKLSDIIKSNNELVKNEQSGAAAHILHENLKM
LQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVITP
DPNLRIDQVGVPRSIAQNLTFPEIVTPCNKNLMKELVQRGNTRYPGAKYIIRNNGDRIDL
RFHPNPSDLHLEYGYKVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCT
SPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKMT
KRDVFIDKEQMMNLLMFLPNWDCKIPKPCILKPKPLWTGKQLFSLIIPGNVNMIRTHSTH
PDEEDDGPYKWISPGDTKVMVEHGELIMGILCKKTLGTSAGSLLHICMLELGHDVCGKFY
GNIQTVINNWLLYEGHSIGIGDTIADPQTYMEIQKAIKKAKEDVIEVIQKAHNMELEPTP
GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVG
QQNVEGKRIPFGFRKRTLPHFIKDDYGPESKGFVENSYLAGLTPSEFYFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPTI
KLSNKAFEKKFKFDPSNERYLRRIFNEEIVREMMGSGEVVSELEREWEQLNKDRAALREI
FPSGESKVVLPCNLQRMIWNVQKIFRINKRAPTDLSPMKVIQGVKELLDKCVIVAGEDRL
SKQANENATLLFQCLVRSTLCTKVVSEEFRLSSEAFEWLIGEIETRFQQAQVVPGEMVGA
LAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAAR
DAEKAKNVLCRLEHTTLKKVTANTAIYYDPDPQNTVISEDQEFVNVYYEMPDFDPTKISP
WLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSEDNKF
TDASDMEDAVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIIITETG
EFKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFQVLGIEAVRKSVEKEMNAVL
QFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLVDAASHA
EVDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKQGIEIPLDPDANILGSTGIFFSSAS
TPSMSPSGFKTPWLGETPGYGGIGMSPSLGSGMTPGGACFSPSGQSDASGLSPAYAFSPQ
PGSPGSPGPSMSPYPMSPASGASPSYSPTSPAYQLPMSPSMTPSSPTYSPTSPNYSPTSP
NYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP
TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPSYTPVSPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPT
SPTYSPTSPSYSPTSPSYSPSSPQHSGSTKYSPSSPNYSPTSPTYSPGSTKYSPTSPTYS
PTSHSYSPTSPSYSPTSPAYSPQAQSYSPTSPTYSASSPTYETDET
NT seq
5721 nt
NT seq
+upstream
nt +downstream
nt
atggccacatccgactcgaaggcaacggtgcgcaccgtgaaaaaagtccagttcggcatt
ctatcgcccgatgaaatcagacgaatgtcagttaccgagagaggcattatttatgccgaa
actatggaaggtggacgtccaaaacttggaggccttatggatccaagacaaggcgtcatt
gaaagaaattcacgatgtcaaacctgtgctggcaacatgactgagtgcccgggacacttt
ggccacatagatcttgccaagcccgttttccatattgctttcatcaccaaaacgattaaa
attctgagatgcgtatgtttcttctgttcaaaaatgttggtcagtccccaaaatccaaaa
atcaaagaaatagtcatgaaatccaaaggtcaaccacgaaagcgtttgactttcgtttac
gatctatgcaaaagtaaaaaaatatgcgaaggaggtgacgaaatggatatcaataaagat
ggtttagtgctggatccgaacaaaaagttgagccacggtggctgtggcagatatcagcca
aatttacgcagatctggcttggacatcacagcggaatggaagcatgtgaacgaagatacg
caagaaaaaaaaatcgcactaactgccgaacgagcttgggaaattctcaggcacataaca
gacgaggagtcgttcattctgggaatggatcccaagttcgcgaggccggattggatgata
ataaccgccttaccggtgccaccgctttcggtcagaccagcagtagtaatgtacggctcg
gctaggaatcaggacgatttaacgcataagctctcggatatcatcaagtcgaacaatgaa
ttggtgaagaacgagcagtccggtgcagctgctcatattttacacgaaaacttgaaaatg
ttgcaatttcacgtcgccacgctggtcgacaacgacatgcctggtatgccaagggccatg
caaaaatctggaaagccactcaaagctatcaaagctcgcttgaaaggcaaagagggtcga
atcagaggcaatctaatgggaaagcgcgtcgatttttcagcgagaaccgtcattacgcca
gatccaaatttgagaattgatcaagtcggcgtccctcgaagcatcgcgcaaaacctcact
ttcccggaaatcgtcacaccctgcaacaagaacctcatgaaggaactcgtgcaaagaggc
aatacccgttatcccggggccaaatacatcatcagaaataatggcgatcgtatcgacttg
cgctttcatccaaacccatcggatctacatttggagtacggttacaaagttgagagacat
atcagggatggtgatttagttattttcaatcgccaacccactcttcacaaaatgagtatg
atgggccatagagtcaaagttttaccttggagtacgttccgtatgaatttaagttgcacc
tcgccttataacgccgacttcgatggggacgaaatgaacttgcacgtacctcaatcaatg
gaaaccagagcggaagtggaaaatattcacgtcactcctcgtcaaattataaccccacaa
gccaataaaccagtcatgggtatcgtccaggatactttgacagctgttcggaagatgaca
aagagagacgtgtttatcgataaagaacaaatgatgaaccttctcatgttcttaccaaac
tgggattgcaagatccccaagccgtgcatcctcaaacctaaacctctttggactggcaaa
cagttattttccctaattattccaggaaatgtgaatatgatacgaacacacagtacacac
ccagatgaagaagacgatgggccgtataagtggatttcaccgggtgacactaaagttatg
gttgaacacggggaattgataatgggcattttgtgtaaaaaaacactcggtacttcggcc
ggttccttgttacatatttgcatgctggaattgggacacgatgtgtgtggtaaattctat
ggcaatattcaaactgttatcaataattggttgttgtacgagggacattccattggtatt
ggcgataccattgctgatcctcaaacctatatggaaattcagaaagctattaaaaaggcc
aaagaagatgtcatagaggttattcagaaagctcataatatggagcttgagccaacacct
ggcaatactcttcgtcagactttcgaaaaccaagtaaacagaatcctcaacgatgctcgt
gataaaactggaggatctgcgaaaaaatctttgactgaatacaacaatcttaaggctatg
gtggtatcagggtctaagggatcaaacatcaatatttctcaagttattgcttgcgtagga
caacagaacgtagaaggtaaacgaataccatttggttttcgtaaacgtactttgccccat
ttcatcaaggacgactatggtccggaatccaaaggcttcgtggaaaattcttatttagct
ggactgacaccatcggaattttattttcatgctatgggaggtcgcgaaggtcttattgat
actgctgtaaaaactgccgaaactggttacattcagcgtcgtttaattaaggctatggag
tccgtgatggttcactacgacggtacggtcagaaactccgttggccaactcattcagtta
cgttacggcgaagacggcctatgcggagaaactgttgaatttcaaaatttacctactata
aaacttagtaataaggctttcgagaaaaagttcaagttcgatccgagcaatgagagatat
ctcaggcgcatatttaatgaggaaatcgttcgagaaatgatgggctctggggaagtagtg
tcagaattggaacgagagtgggaacaacttaacaaagacagggcagctctgcgggaaatt
tttccaagtggcgaatcaaaagttgtacttccttgcaatttacagcgaatgatatggaat
gtgcaaaaaatcttccgcatcaacaaacgagctccaactgatttgagcccgatgaaagta
attcaaggagtcaaagaacttttggacaagtgcgtaattgtagcaggtgaagatcgactg
agtaagcaagccaatgaaaatgcaacattgctctttcaatgcttggtgcgatcgactctg
tgcaccaaagtcgtttcggaagaatttagactgtctagcgaagctttcgaatggttgata
ggagaaatcgaaactagatttcagcaagcgcaggttgtacccggtgagatggttggtgct
ttagccgctcaatccttaggtgagccggccacacagatgacattgaatacattccatttc
gctggagtatcttctaagaacgtaactctcggagtgccacgactgaaggaaatcatcaac
atcagtaaaaagcccaaagcgccttctttgaccgtttttctcactggagccgccgccaga
gatgccgaaaaagcaaagaacgttctttgccggctcgagcatacaactctcaaaaaagtt
actgcaaatacggcaatttattatgatcctgatcctcaaaatacggtaatttctgaagat
caagaattcgtcaatgtgtactacgagatgccggactttgatcctacgaaaatctcacct
tggttactacgtatcgagctcgatcgcaaaagaatgacggataaaaagttgacgatggag
cagatagccgagaaaattaatgcaggctttggcgacgatttgaattgcatattcaacgac
gataacgccgaaaaactcgttctccgaattcgtatcatgaacagcgaagacaataaattt
accgatgcgtctgacatggaagacgctgttgataaaatggaagacgatatgtttcttcgt
tgcatcgaagccaatatgctaagcgacatgactctgcagggcattgaggcaatcggcaaa
gtatacatgcacttgcctcaaactgatgcgaagaaaagaatcatcataacggagacaggc
gagttcaaagcaattgccgaatggttgctcgaaacggacggcacaagtttaatgaaagta
ctgagtgaacgcgatgttgacccagtgcgaaccttctccaatgatatttgcgagatattt
caagtactgggcatcgaagctgtaagaaaatccgtcgagaaagagatgaacgctgtgctg
caattctatggactgtacgtcaactaccgtcacttggccttgctttgcgacgtcatgacc
gccaaaggacatctcatggccattactcgccatggcattaacagacaagacacaggcgcc
cttatgaggtgttctttcgaagaaacagtcgatgtgttagtggatgcagcttcgcacgcc
gaagtcgatcccatgagaggtgtatcggaaaacataattatgggtcagttacctcggatc
ggtactggttgcttcgatcttttactcgatgcagaaaaatgtaaacagggtattgagatc
cccttagatccagatgccaacatactgggtagtacgggtattttcttcagcagcgccagt
acacctagtatgagtccgtcgggcttcaaaactccttggctaggagaaactcctggatat
gggggcataggaatgtctcctagcttaggtagtggaatgacgcctggaggggcctgtttt
tctccatccggacaatccgacgcgtctggcttatctcccgcttacgctttttcgcctcaa
ccgggaagtcctggcagtcctggaccaagtatgagtccttatccaatgtcaccagccagt
ggcgcttctccgagctattcgccaacgagtccggcttaccaattgccaatgtcgccaagc
atgacaccgtcgagccctacttactcaccaacttcaccgaattactcgccaactagtcca
aattactcaccaacgagtccaagttactctccaactagcccaagttactctccaactagt
ccgagctactcaccaacgagtcctagctattcaccaacatccccgagttattctccaacg
agccctagctattctcccacgagtcccagttattctccgactagtcctagttactcacca
acgagtccgagttactcgccaacgtcacccagttattccccaactagtcccagctactcc
ccgactagtccaagttactcacctacgagtccaagttactctccaacttcacctagttat
tcgccgacgagtcctagttactcacccacaagccctagttactcgccaacgtcaccaagt
tattcaccgactagcccaagctactcacctacgagtcccagttattctcctacttcaccg
agttatacgcccgtttctccttcgtactcgccatcttctcccaagtattctccgacttcg
ccgagttactctcccacctcgccatcgttcgctggtacttccccgcaatacactccaact
tctcccacttattcgcccacgagtccctcgtactcgccaacatctccaagttattcgcca
agttccccacagcatagtggaagtacgaaatattcaccgagcagccctaattattctccg
acatctccgacttattctccaggaagtaccaaatactctcctacgtcaccaacctactcg
ccaactagtcattcttattcaccgacatcgccaagttattctccgacttctccggcttac
tcgcctcaagctcaaagctactctcctacgagtccgacgtactctgcatcttcaccaact
tatgagactgatgaaacttaa
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integrated database retrieval system
