Trichogramma pretiosum: 106655848
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Entry
106655848 CDS
T07644
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
tpre
Trichogramma pretiosum
Brite
KEGG Orthology (KO) [BR:
tpre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpre03041
]
106655848
Enzymes [BR:
tpre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106655848
Spliceosome [BR:
tpre03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
106655848
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HA2_C
Helicase_C
R3H
OB_NTP_bind
DEAD
Ank_2
AAA_19
nSTAND3
Ank_5
AAA_22
HA2_N
Ank
PhoH
ATPase
IML1
AAA_7
Ank_3
ABC_tran
Ras
AAA_14
Motif
Other DBs
NCBI-GeneID:
106655848
NCBI-ProteinID:
XP_014231948
LinkDB
All DBs
Position
Unknown
AA seq
1134 aa
AA seq
DB search
MLCHRKSDKMGEDTKISINLTIKKFLENKDHNEFEFPSSYTAKERAFIHSLARKVGLKSK
SRGRGANRFLTIYKREGSTIVQKDASIKLQKVSRQTIFNLIKRFPLDNKERRDLLPPIER
ERSIDHDVNNCCRAMGRLNNSIPQVPSLKTNADVLNFRNSLTVVSKKKELLDMIENNSCV
VIIGETGCGKTTQIPQFILEDYQQKKQPCRIICTQPRRLSAVSVAERVAFERDEKIGQTV
GYQIRLESRVAPKTLLTYCTHGVLLRTLMGDDSALAMITHIVVDEIHERDRFCDFLLIAL
KDAVAKYRTLRVILMSATIDPSIFVDYFNKCPLISIPGKSFNVDVFYLEDILKMTNYITI
ELSRQKDSLIADQKNSSISCNEEKLFLSSNKEHHLVTLKKEDEFKSHQIELDYWVIEELD
KLINKAWLSGKESEFIEILNLMHSENISINYQHSHTSVTLLMISAGRGSTKVVEKLLKYG
ANLNLRSCNNWTALDWAQNMNQSACIQLIEMHVKKCDSMLVKNDNLQSENCTFVDESQRL
LEVYNQIYNSEVINYDLILKLLLNIHLNTSTGSILIFLPGYDDIITMKEKIIAESKLLQA
SRYNLFILHSNMQTSDQKRVFKPTNQGSRKIILSTNIAETSITIEDVVYVIDSGKIKEKS
FDAISGISTLRANWISQSCAEQRKGRAGRCQKGVCYRLYSSIQYNYMQLYQTPEILRLPL
HELCLYSKQLTSTNTPIAEFLEKAIEPPSNIVTRNAVQFLKTIDALDPWEDVTELGCHLL
DLPIEPRLGKMLLYAVVLKCLDPILTIACSLAYKDPFIIPTSSSQKQAALSARKEFAASS
YSDHMALLRAFQVWQNARANGWEKLFCEKHFVSAAVMEMIVGTRTQLLGQLRASGFVKAR
GPGDIRDLNSNSENWAVVKAALTAGMYPNLLRVDRQHSQLRSQKEVEVNFHPSSTLKDFS
KTCNKIDAKLVSSLPCEWIIYEELSRSGRLCLAKTVTLVNSITVALFCGPTRLPMDVIQE
AESIPESESDSEADESNEGTTILKLDDWIAFKLDSSTAQLILHLRQKWNALFLRRMKNPN
KVMTQHDEQVIKTLTTVITNEEQALGLQQPLGIGQRPRPLLVDYYPATNKRSED
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgtcatcgaaaatctgataaaatgggagaagataccaaaatatctatcaattta
actatcaagaaatttttagaaaacaaagatcataacgaatttgaatttccatcttcatat
actgcaaaagaaagggcgttcattcattctctagctagaaaagtgggtttgaagtcaaaa
agtcgcggtcgtggggcaaacagatttttaaccatatacaaaagagaaggttcaactatt
gttcagaaagatgcctctattaaacttcaaaaagtatccagacagacaatttttaatttg
atcaaaagatttccattagacaacaaagagcgtcgtgacttgttgccgccaatagaaaga
gaaaggtctattgatcatgatgtaaataattgttgtagagctatgggcagattaaacaat
agcataccacaagttccatccttgaaaactaacgcagatgtgttaaattttcgtaattca
ttaactgtagtatccaaaaagaaggaattactggacatgattgaaaataattcttgtgta
gtcataattggtgaaacaggatgtgggaaaacaactcaaattcctcaattcattttagaa
gattatcaacaaaaaaaacaaccatgtagaataatttgcactcaaccacggcgattatct
gcagtttctgttgcagaaagagtagcttttgaaagagatgagaaaattggtcaaactgtt
ggttatcaaataagactagaaagtagagttgcacctaaaacacttttgacatattgtact
catggagtcttattaagaacccttatgggtgatgattctgctttagctatgattacacat
atagttgttgatgaaattcatgaacgtgatcggttctgtgattttttactaattgcttta
aaagatgcagttgccaagtataggacattgcgagttattttaatgagtgctacaatagat
ccttctatttttgttgattattttaacaaatgcccgttaattagtatacctggaaaatcc
tttaatgttgatgttttttatttagaagacatattaaaaatgactaactatattacaata
gaattatcaagacaaaaagactctttgatagcagatcaaaagaactcttcaatttcttgc
aatgaagaaaagttatttcttagcagtaataaagaacatcatttagtaactttaaagaaa
gaagatgaatttaaatcccatcaaattgaattagactattgggttattgaagaattggat
aagttaataaataaagcatggttatcaggaaaagaaagtgaattcattgaaatacttaat
ttgatgcactcagaaaatatatcaattaactatcaacattctcatacctctgttacatta
ttaatgatttcagctggcagaggatcaacaaaagtagtagaaaagctcctaaaatatgga
gcaaacttgaatttgagatcttgtaataactggacagcattagattgggctcagaatatg
aatcaatctgcatgtattcaattaattgaaatgcatgtgaagaaatgtgattcaatgtta
gtaaaaaatgataacttgcaatctgaaaattgtacctttgttgatgaaagtcaacggtta
ttagaggtttataatcaaatatataatagtgaagttatcaattatgatttaattttgaag
ttacttttaaatattcatttaaatacgtctactggatcgattttaatatttttaccaggt
tatgatgatataataacaatgaaagagaaaataattgctgagagtaaactactccaagct
agtagatacaatttatttattttacattctaatatgcaaaccagtgatcaaaaaagggtg
ttcaaaccaaccaaccaaggatcaagaaaaatcatattgtctactaatattgcagaaact
agtattactattgaagatgtcgtttatgttattgattctggtaaaataaaagaaaaatca
tttgatgctatatctggtatttcaactcttcgtgcaaattggatttcacaatcatgtgct
gagcaaagaaaagggcgtgctggcagatgccaaaaaggtgtttgttatagattatactca
tctattcaatacaattatatgcaattatatcagacaccagaaattttaagattgccttta
catgaactttgtctttattcgaaacaattaacatctaccaatacacctatagctgaattt
ttggaaaaagctatagaaccgccttccaatattgtaacaagaaacgctgtgcaattctta
aaaacaattgatgcattagatccttgggaagatgtaactgaactgggatgtcatcttctt
gatttgcctatagaaccacgtttgggtaaaatgttactctatgcagtagttttgaaatgc
ttggatcccattttgacaattgcatgcagtttggcatacaaagatccatttattatacct
acttcatcgtcccagaaacaagctgctttgtctgcacgtaaagaatttgctgcttcgtca
tattctgatcatatggctcttttgagagcttttcaagtttggcaaaatgcaagagctaat
ggatgggaaaaattgttctgtgaaaaacatttcgtttctgctgctgtaatggaaatgatt
gttggaactagaactcaattgttgggacaattacgagcttcaggttttgttaaagcaaga
ggacctggagacattcgagacttgaattctaattctgaaaattgggcagttgtaaaagca
gctttgaccgctggcatgtacccaaatttattgagagtagatcgccagcattcgcaactt
cgatctcaaaaagaagttgaagtaaactttcatccatcctccacattgaaagatttttcg
aagacctgcaataaaatagatgctaaactcgtcagctctttaccttgtgaatggataatt
tatgaagaattaagtcgatctggacgtctctgtctcgccaaaacagtaacattagttaat
tctatcactgtagcattattttgcggcccaactcgattaccaatggacgtcatacaagaa
gcagagtctattcctgaaagtgaatctgattcagaagctgatgaaagtaatgagggtact
accattttaaaactagatgattggattgcatttaaacttgatagttctactgctcaactc
attttacatttacgacaaaaatggaatgccttgtttcttcgacgtatgaagaatccaaat
aaagtaatgactcagcatgatgaacaagttatcaaaacattaacaactgttataacaaat
gaagagcaagcgttaggcttacaacagccattaggaattggtcaaagaccacgtccttta
ctggttgattattatcctgcaaccaataagcgatcggaagattga
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