Trichogramma pretiosum: 106656571
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Entry
106656571 CDS
T07644
Name
(RefSeq) putative U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
tpre
Trichogramma pretiosum
Pathway
tpre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106656571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpre03041
]
106656571
Enzymes [BR:
tpre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
106656571
Spliceosome [BR:
tpre03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
106656571
Complex C
U5 SnRNP specific factors
106656571
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_30
AAA_22
SpmSyn_N
Motif
Other DBs
NCBI-GeneID:
106656571
NCBI-ProteinID:
XP_014233112
LinkDB
All DBs
Position
Unknown
AA seq
2134 aa
AA seq
DB search
MADAAARQLQYEYKANSNLVLQADVRLIERRSRDEATGEVMSLVGKLDGTKMGDRAKRTK
PGKAEERKVKRQKRDEAQYDFAHSKGATVLSEDVDDTVGIMYRPKTQETRQTYEVLLSFI
QEALGDQPHDILCGAADEVLSVLKNDRLKEKEKKKETEQLLGNLAEERFALLVNLGKKIT
DFGTDEKTTGGEENIETYGINVQFEESSEEDDEDVYGEVRDNEDEGDEGEEANDNRAIHA
ENLGRTEEMKKEKTLHPRDIDAHWLQRQLNPIYNDAIVSHDKAREVLHILKTATDDRDCE
SQLVLKLGYDCFDFVKQLRQYRHMIAYCISLASSQSESERQKIRKEMSENPQLSKILQAL
DTGKGEDGEETMEARAQRKRREEHEDAGGPGGLVQGTRNMIDLEDIAFSQGSHFMPNKRC
HLPDGSFRKQRKGYEEVHVPALKPKPFAADEKLVSISDLPKFAQPAFEGFKTLNRIQSRL
YKTALDEDENLLLCAPTGAGKTNVALLCMMREIGKHVNSDGTINADDFKIIYIAPMRSLV
QEMVGNFGKRLAGYNLTVSELTGDHQLTREQIASTQVIVCTPEKWDIITRKGGERTFTSL
VRLIIIDEIHLLHDERGPVLESLVARTLRNIETTQEDVRLVGLSATLPNYKDVATFLRVK
TDTGLFYFDNSFRPVALEQQYIGVTEKKALKRFQVMNEVVYEKTMDHAGKNQVLVFVHSR
KETGKTARAIRDMCLDKDTISQFVRDGSASMEVLRTEAEQVKNSELKDLLPFGFAIHHAG
MTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGRWTELGALD
VLQMLGRAGRPQYDTKGEGILITNHSELQFYLSLLNQQLPIESQFVSKMPDMLNAEIVLG
TIQNVRDAVTWLGYTYLYIRMLRCPNLYSVSSDYLKEDPLLEQHRADLVHSAAVTLDRAG
LIKYDRKTGNFQPTELGRIASHYYCTHETIATYNNLLKRTLSEIELFRVFSLSGEFRNIN
VRDEEKIELHKLMERVPIPIKENMEEPSAKVNVLLQAYISQLKLEGFALMSDMVYVTQSA
SRLMRAIYEIVLFRGWAQLADKCLSLCKMIDRRMWQSMSPLRQFRKMPEEIVKKIEKKNF
PWERLYDLGPNEIGELIRVPKLGKTIHKYVHQFPKLELSTHIQPITRSTLRVELTITPDF
IWDEKVHGASEAFWILVEDVDSEVVLHHEYFLLKQKYATDEHTVKFFVSVFEPLPPQYFL
RVVSDRWIGAETQLPVSFRHLILPEKNLPPTELLDLQPLPISALRNKVFEKLYEDKFNQF
NPIQTQVFNAVYNTDDNVFVGAPTGSGKMTIAEFAVLRLLSQNPDGRCVYMVSKESLAKI
VYADWMTKFQKTLGKPVTMLSGETTADLKLLNKGQIIITTAEKWDVLSRRWKQRKNVQNI
QLFIVDELQLIGGEEGPVLEVVCSRARYISAQLEKPTRIVALSSSLADAKDVAQWLGAPA
SCTFNFHPSVRPLPLELHVQGFNITHNASRLVAMTKSVYNAILRHAPRKPVIVFVPTRKQ
ARLTAFEILTFAAAENRPNQFLHTEVSEIEPYLDHLSDRSLRETLIQGVAYIHEGLSNND
RHNVQEFFARGYIQVAVVTRELCWSLSIYSHLVVIMDTQCYNGKTHTYEDYPITDVLQMV
SRANRPQIDDDGKCVLLCQSSKKDFFKKFLNEPLPVESHLDQRLHDHFNAEIVTKTIENK
QDAVDNLTWTFLYRRLTQNPNYYGLQGVTHRHLSDHLSELVESTLTDLEQAKCVTVEDEM
DTVPLNLGMIAAYYYINYATVEMFDASLTARTKSRGLIDIISAAAEYEYIPVRQREESLL
KSLATRLPHAPQAQKLADPHVKAQLLLQAHLSRIQLGPELQKDTELVLSKSIRLIQACVD
VLSSSGWLAPAVAAMELAQMVTQAMWSRESYLKQIPHFTSEIIKRCTDREVETVFDIMEL
DDDVRARLLQLSDSQMNDVARFCNRYPNIEMSYEVIDKDRIRHGEPVNVQVNLEREDEIS
GPVVAPHFPQKREEGWWVVIGDPDKNQLLSIKRLTFQQKTSVRLDFTAPAAGRHSYTLYF
MSDSYLGCDQEYKINIDVGEYVSEDDASSGSESE
NT seq
6405 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgcagcggcccggcaactgcaatacgagtacaaagcgaactccaatcttgtt
ttacaagctgatgttcgactcatcgagagacgaagcagagatgaagctacaggagaagtt
atgtcccttgttgggaaacttgatggaacaaaaatgggtgatcgtgccaaaagaactaaa
ccaggcaaagctgaagaacggaaagtaaaacgtcaaaaaagagacgaagctcagtatgac
tttgctcatagtaaaggagctactgttctctcagaagatgttgatgatacggtagggatt
atgtatagaccaaaaacacaagaaactcgtcaaacttatgaggtactattgagtttcatt
caagaggctcttggtgatcaaccacatgatattctttgtggtgctgctgatgaagtatta
tctgtattgaaaaatgatcgcctaaaagagaaagagaagaaaaaagaaactgaacaatta
ctaggaaatttggctgaagaaagatttgcactcctagtaaacttaggaaagaaaatcaca
gatttcggaactgatgaaaaaactaccggtggagaagaaaatattgaaacttatggtata
aatgttcaatttgaagaaagtagtgaagaagatgatgaggatgtttatggtgaagtgaga
gataatgaggatgaaggagatgaaggtgaagaagctaatgataacagagctatccatgct
gaaaatcttggtagaacagaagaaatgaaaaaagaaaaaactcttcatccaagagatata
gatgctcattggttgcagcgacaactgaatcctatctataacgatgctatagtatcacac
gataaagctagagaagttttgcatatactaaaaacagccactgatgatcgagattgtgaa
agccaacttgtactaaagcttggttatgattgctttgacttcgtcaaacaacttcgacaa
tatagacatatgattgcatattgcatatcgttggcatcatctcaatctgaatcagaacga
cagaaaattcgcaaagaaatgagtgaaaatcctcaactgtccaaaattcttcaagctctt
gatactggaaagggagaagatggcgaagaaactatggaagctagagcacaaagaaaacgc
agagaagaacatgaagatgctggaggccctggtggtcttgtacaaggtacaagaaacatg
attgatttggaagacattgcgttctcacaaggaagtcattttatgcccaataagcgctgt
cacttacctgatggtagtttcagaaaacaacgaaaaggttatgaagaagtgcatgttcct
gctctgaaaccaaaaccatttgctgctgatgaaaaattggtctctatcagtgacttacca
aaattcgcacagccagcttttgaaggtttcaaaacactcaacagaatacagagtagattg
tataaaactgctcttgacgaggatgagaatttattgttgtgtgcaccaactggtgctggt
aaaactaatgtcgcattgctgtgtatgatgcgagaaataggaaaacacgtgaactctgat
ggtaccatcaacgctgatgatttcaaaatcatatatattgcccctatgcgttcactggta
caagaaatggttggaaactttggaaaaagattggctggttacaaccttacagtttctgag
ttgactggtgatcaccaacttaccagagaacaaattgcatcgacgcaggtcattgtttgt
actcctgaaaaatgggatattattaccagaaagggaggcgagagaaccttcacatctctt
gtaagactcatcatcattgacgaaattcatttacttcacgacgagcgaggacctgttctt
gaatcattggtggctagaactttgagaaacatcgaaaccactcaagaagacgtaagatta
gttggtctgtctgctactctaccaaactacaaagacgttgctacgtttttgcgcgttaaa
accgacaccggtctattttattttgacaatagcttccgacctgttgctcttgaacaacag
tacattggagttactgaaaagaaagctctgaaacgtttccaagtaatgaacgaagtcgtg
tatgaaaaaacaatggaccacgctggcaaaaatcaagtactcgtgttcgtgcattctcgc
aaagaaactggcaaaactgcgcgcgctattcgcgacatgtgcttggacaaggacaccatc
agtcaatttgtacgcgatggctcagcctccatggaagtgctgcgaaccgaagctgaacaa
gtgaaaaatagtgaactcaaagatctactgcctttcggattcgccatccatcatgccggt
atgactcgagtcgatcgtacgctcgttgaagatttgttcgccgacagacacattcaagta
ctggtgtcgaccgccaccctggcttggggtgtgaatttaccagctcacactgtaatcatc
aaaggcacgcaagtgtacaatccagagaagggtcgttggaccgaattaggtgctttggat
gtcttgcagatgcttggtcgagctggtcgtcctcaatacgacaccaagggtgaaggtata
ctgattacaaatcacagtgaattgcagttctatctgtcactgttgaatcagcaattaccg
atcgaatcgcaattcgtgagtaaaatgccagacatgctgaacgccgaaatcgtcttgggt
acgattcagaatgtgcgcgacgcagtaacgtggctgggctacacgtacttgtacatccgt
atgttgcgctgtccgaatctctattccgtcagctccgactatctgaaggaagatccattg
ctggagcagcacagagccgatctcgttcactccgcggcggtgacgctcgaccgcgcggga
ttgataaagtacgatcgcaaaaccggcaatttccaaccgaccgaactgggacgtatcgcc
tcgcactactactgcacacacgagacaatagcgacttacaataatttgctcaagagaacc
ctgagcgaaatcgaacttttccgagtattttcactgtcgggagaattcagaaacatcaat
gttcgtgatgaagagaagatagagcttcacaagttaatggaacgagttcccatacctatc
aaagaaaacatggaagagcctagcgccaaggttaatgtgttgcttcaagcttacatatcc
caactgaaacttgaaggtttcgctctgatgtcggatatggtttatgttacccaatcagcg
tctcgactcatgcgagcgatctatgaaatagtattgttccgcggttgggcccaattggct
gacaaatgcttgagtttgtgcaagatgatcgatcgccgaatgtggcagtcgatgtcacct
ttacgccagttccgcaagatgcccgaagaaatcgtcaaaaaaattgaaaagaaaaacttc
ccatgggaacgtctctacgatcttggtcccaacgaaatcggtgaacttattcgcgtgcca
aagctcggcaaaaccattcataagtacgtccatcagttcccgaaattggagctctcgact
catattcaaccaatcactcgatctactttgcgcgttgagcttaccattactcctgatttt
atctgggatgaaaaagtacatggggcgtcggaggccttttggattctcgtcgaggatgtc
gattcagaggttgttttacatcatgaatatttcctgttaaaacaaaaatacgcaaccgat
gaacatacggtcaaatttttcgtatcagtgtttgagcctttgccacctcaatacttttta
cgagtggtgtcggatagatggataggcgcagaaacgcaattgcctgttagtttcaggcat
ctcatacttcccgaaaaaaatctaccaccaacagagttgttagatttacagccgctacct
atatcagccttgcgaaataaagtcttcgagaagttgtatgaagataaattcaatcaattt
aatccaattcaaactcaggtttttaatgctgtctacaacacagacgataatgtctttgtt
ggtgcaccaactggttctggtaaaatgacgatcgcggagtttgccgttttacgtctttta
tctcaaaaccccgatggtcgttgtgtttacatggtgagcaaggaatcattagccaaaatc
gtctatgcggattggatgaccaaattccagaaaactttgggaaaaccagtgacaatgttg
agtggcgaaacaaccgccgatctcaaattactcaacaaaggacaaatcataattacgaca
gctgaaaaatgggatgtattatctcgaagatggaaacagcgtaaaaacgttcaaaatatt
caacttttcatcgtagatgaattacaattgatcggaggcgaagaaggtcccgttctcgaa
gttgtctgctccagagcaaggtacatatctgcccaacttgaaaaacccacgcgcatcgtc
gctttatcaagctctttagccgacgccaaggacgtagctcaatggttaggtgctccagct
tcgtgcaccttcaactttcatccatcggtgcgcccgctacctttggaacttcacgttcaa
ggcttcaatataactcacaacgcatcgagactcgtagccatgacgaagtcggtctacaat
gccatcctacgtcacgccccaagaaaacctgtcatcgtgtttgtgcctacccgcaaacaa
gctcgtctcacggccttcgaaattttgacatttgctgcggccgaaaatagacccaatcaa
tttctacataccgaagtctcagagatagagccatacttggatcacctgagtgacagaagt
cttagagaaactcttatacaaggtgtagcctacattcacgaaggcttatcaaataacgat
cgtcacaatgttcaagaatttttcgcgcgcggttacatacaagtagcagtggtcactcgc
gaactttgctggagtttatcaatatactcccatctagttgttattatggacacacagtgt
tataatggcaaaacgcatacgtacgaagactatcccatcactgacgttctgcagatggtg
tcccgtgccaataggcctcaaatagacgacgacggcaaatgcgtacttctatgccaaagc
tccaaaaaagatttctttaaaaagtttttgaatgaacccttgccagtagagagtcatttg
gatcaaagacttcacgatcatttcaatgccgaaattgtgacgaaaacaattgaaaacaag
caagacgccgtagataatctcacttggacattcctttacagaagactcacccaaaatcct
aactactacggactccaaggagtgacacacagacatctttctgatcacctttcagagttg
gttgaaagtaccttgaccgatctcgaacaagctaagtgcgttactgtcgaagatgagatg
gacacggtaccattgaatcttggaatgatcgccgcatattactacattaattacgctacc
gttgaaatgttcgatgcatcgttgactgctagaactaagagtcgtggcttaattgacatc
atatccgcagctgctgaatatgaatatataccagtcagacagagagaagagagcttattg
aaaagccttgcaacaagattacctcatgcgccgcaagcacagaaattggctgatcctcat
gtgaaggcacaattattattgcaggcacatttatcacgaattcaattgggaccggaacta
caaaaagatacagaattggtactcagtaaatctatcagacttatacaagcctgcgttgat
gtgctcagctcttcaggttggttagctccagctgtagcagctatggaactggctcagatg
gtcactcaagctatgtggtccagagaatcctacttgaaacaaattccacactttacatct
gaaataataaaacgttgcacagatcgtgaagttgagacggtctttgacattatggagctt
gacgacgatgtccgtgctcgtttactacaactatcagattctcaaatgaacgatgtcgca
agattctgcaatcgttatcccaacattgaaatgtcctatgaagtgatcgacaaagacaga
attcgacacggcgaacccgtgaacgttcaagtaaatttggaacgtgaagacgaaataagc
ggtccagttgtggcgcctcatttccctcagaagagggaagagggatggtgggttgtaatt
ggagatcccgacaagaatcaattgctctcaatcaagagattgactttccaacagaagacc
tctgtcagattagactttacagccccagcagctggaagacactcttatacactgtacttc
atgagtgactcttatttgggatgcgatcaagaatacaaaattaacattgacgttggagag
tatgtgtcggaagatgatgccagttctggatcagaatccgagtaa
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integrated database retrieval system
