Trichogramma pretiosum: 106656964
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Entry
106656964 CDS
T07644
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tpre
Trichogramma pretiosum
Pathway
tpre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106656964
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpre03019
]
106656964
03041 Spliceosome [BR:
tpre03041
]
106656964
Messenger RNA biogenesis [BR:
tpre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
106656964
Spliceosome [BR:
tpre03041
]
Complex B
Other components
Prp19-related factors
106656964
Complex C
106656964
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_2
TPR_8
NRDE-2
Mad3_BUB1_I
SNAP
ARM_TT21_C
BDHCT_assoc
Motif
Other DBs
NCBI-GeneID:
106656964
NCBI-ProteinID:
XP_014233669
LinkDB
All DBs
Position
Unknown
AA seq
869 aa
AA seq
DB search
MVLSTQTVNGGNKMEKHNNKSEQELSITTEDVVYEEEIVRNPYSVKHWQRYIEHLTASKS
SNLNVVYERALKELPGSYKLWYAYLQHRLKRLKGRRIDDPMYEQLNHIFERALVFMHKMP
RIWMDYCQFMTEQDLVKRTRHIFDRALRALPLTQHHRIWPLYLTFVKKYNIPETAIRIFR
RYLKLAPEEAEEYIDYLISIGKLDEAAVKLAEVVNADEFVSKYGKSKHQLWNELCDLISK
NPTKIRSLNVDAIIRGGLRRYTDQAGPLWNALADYYVRSALFERARDIYEEGIQSISTVR
DFAQIFDAYAQFEELSIKRKMEEVGENPTPEDDIDLELRIARLEHLMSRRLLLLNSVTLR
QNPHNVSQWHERVKLYEGQPHEIINTYTEAVQTVEPKQAAGKLHTLWVAFANFYEKNGQL
SDARTVFEKAILVPYLKVDDLASVWCEWAEMEIRHDCYAEALKLMHRATAMPSRKVAYHD
ETETVQARLYKSLKVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEEN
KYFEEAFRAYEKGIALFRWPNVYDIWNTYLTKFLQRYGGSKLERSRDLFEQCLENCPPKY
AKALYLLYAKLEEEHGLARHAMSVYERATGAVLDEERFGMFNIYIKKAADIYGVPKTREI
YEKAIEVLKEENAREMCMRYADMETKLGEVDRARAIYIHCSQFSDPRMTNKFWQTWKDFE
VSHGNEDTMREMLRIKRSIQAAYNTTQINLSAQALTSSENNEPISAMDSLNAATTKSGEQ
QEIMRSAHTINFVRGATVGGASAEPKVVNPDEINIDADAMDVDDDDDDDDDDEMDQDNSE
NGETEDVPVEQQQIPTQVFGGLKNDDEND
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atggtcttgtccactcaaaccgttaacggtggtaataaaatggagaagcacaacaacaag
agcgagcaggagctctccatcacgaccgaggacgtggtgtacgaggaggagatcgtacgc
aatccctactcggtcaaacactggcagcgctacatcgagcatctgaccgccagcaagagc
tcgaacttgaacgtcgtctacgagagagctctgaaggaattgccaggcagttacaagctc
tggtacgcctatctgcagcacaggctcaagcgtctcaaaggccgacgcatcgacgatccg
atgtacgagcagctcaatcacatcttcgagcgggccctggttttcatgcacaaaatgcca
aggatctggatggactattgtcaattcatgaccgagcaagatctcgtgaagagaacgcgg
cacatcttcgatagggccctgcgtgccttgcctctcactcagcatcacagaatatggccg
ctctacttgacgtttgtaaaaaaatacaacattccggagacagctataaggatctttcgc
aggtatctcaagttagcacccgaggaggcggaggagtacatcgactacttgatatccatc
gggaaactggacgaggctgcggtcaaactcgccgaagtagtcaacgctgacgaattcgtt
tccaaatatgggaaatccaagcatcagttgtggaacgagctgtgcgacttgatatcaaaa
aatccaactaaaatcagatcattgaatgtcgatgcaatcattcgtggaggactcaggaga
tacaccgaccaagctggtcccttgtggaatgctcttgctgactattacgtcagaagtgct
ctttttgaaagagctagagatatttacgaggagggcattcaaagcatttctacggtaaga
gattttgcacaaatatttgacgcatatgctcaattcgaagagttaagtataaaacggaaa
atggaagaagttggagaaaatccaactccagaagacgatattgatttggagctgaggatt
gccagacttgaacatcttatgagcagaagattattgttattgaattcagttactttaaga
caaaatccacataatgtttcgcagtggcatgaacgagtaaaattgtatgaaggccaacct
catgaaatcattaatacttatactgaagctgtgcagacagtcgaacccaaacaagctgct
ggaaaattacacactttatgggtggcatttgccaatttttatgaaaaaaatgggcaactg
tcagatgccaggacagtatttgagaaagccattcttgtaccttatcttaaagtcgatgat
ctagcttctgtatggtgtgagtgggctgaaatggaaatacgccatgattgttatgctgaa
gcattaaagttgatgcaccgtgctacggcaatgccatccagaaaagtagcttaccacgat
gaaactgaaactgtacaagcgagattgtataaatctttaaaagtatggtcaatgtatgct
gatttggaagaaagttttggaaccttcaagacatgtaaagcagtctatgataagatcata
gatttgaaaattgctactccacagatcataataaattatggactattcttggaagaaaac
aaatatttcgaagaagctttcagagcatatgagaaaggcattgctctattcagatggcca
aatgtttatgatatttggaatacatatcttacaaaattcctacaaagatatggtggatct
aaattggaaagaagtagagacctgtttgaacagtgcctagaaaattgtccaccaaagtat
gcaaaggctttatatttgttgtacgcaaagttagaagaagaacatggtttggctcgtcat
gcaatgtcagtttatgaaagagcaacaggtgctgtgttagatgaagagcgattcggaatg
tttaatatttatattaaaaaagcagcagatatatatggagttccaaagactagagagatt
tatgaaaaggcgatagaagtattaaaggaagaaaatgctcgagagatgtgcatgagatat
gctgatatggaaaccaaactcggtgaggttgatagggcaagagcaatatacattcattgt
agtcaattctcagatccaagaatgaccaacaagttctggcaaacttggaaagattttgaa
gtaagccacggtaatgaagacacaatgagagagatgcttaggataaaacgttcaatccag
gctgcgtataatacaacacagatcaacttatcggctcaagcattaacatctagtgaaaat
aatgagccaatcagtgccatggattctttgaatgcagccacaacgaaatctggtgaacag
caagaaatcatgcgctctgcccacacaatcaacttcgttcgaggagctacagttggtgga
gcaagtgcagaaccaaaagttgttaacccagacgaaattaacatcgatgcagatgccatg
gacgtcgacgacgatgatgatgacgacgacgacgacgaaatggaccaagataatagcgaa
aatggcgaaactgaagatgttcctgttgaacaacaacaaattccaactcaagtatttggt
ggcttgaaaaatgacgatgaaaacgactaa
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