Trichogramma pretiosum: 106657886
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Entry
106657886 CDS
T07644
Name
(RefSeq) ATP-dependent RNA helicase WM6
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tpre
Trichogramma pretiosum
Pathway
tpre03013
Nucleocytoplasmic transport
tpre03015
mRNA surveillance pathway
tpre03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpre00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
106657886
09122 Translation
03013 Nucleocytoplasmic transport
106657886
03015 mRNA surveillance pathway
106657886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpre03019
]
106657886
03041 Spliceosome [BR:
tpre03041
]
106657886
Enzymes [BR:
tpre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
106657886
Messenger RNA biogenesis [BR:
tpre03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
106657886
Spliceosome [BR:
tpre03041
]
Complex C
Other components
EJC/TREX
106657886
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
106657886
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Thioredoxin_6
P-loop_SecA
AAA_19
Motif
Other DBs
NCBI-GeneID:
106657886
NCBI-ProteinID:
XP_014235104
LinkDB
All DBs
Position
Unknown
AA seq
425 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQIVEGNGEVVQKKKEVKGTYVSIHSSGFRDFLLKPEILRAIVD
CGFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTEKQVYVLVMCHT
RELAFQISKEYERFSKYMPQVKVSVFFGGMPIQKDEEVLKTTTPHIVVGTPGRILALIKS
KKLNLKNLKHFVLDECDKMLEQLDMRKDVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKF
MQDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMA
LAQLLTEQNFPAIGIHRGMTQEERLTRYQSFKDFQKRILVATNLFGRGMDIERVNIVFNY
DMPENSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNDVQERFDVNITELPDEIDLAS
YIEGR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atggccgacaatgatgatcttttggactacgaagacgaggagcagactgagcagattgta
gaaggtaacggagaagttgttcagaagaaaaaggaagtcaaaggaacttatgtgtccatc
cacagcagtggtttcagagactttctactgaaaccagaaattctgcgcgcaattgttgat
tgcggttttgaacatccatcggaagttcaacatgaatgtattccacaagctgtactaggt
atggatattttatgtcaagcaaaatctggtatgggcaaaacagctgtatttgtgttggcc
actttgcaacagcttgaattgacagaaaaacaggtctatgttttagtcatgtgtcatact
cgagaactcgcattccaaatcagcaaagagtatgagaggttcagcaaatatatgcctcaa
gttaaggtctcagtgttctttggtggtatgcctattcaaaaagatgaggaagttctaaaa
actaccacaccccatattgttgttggaacaccaggacggatcttagcacttatcaagagt
aaaaagcttaatttgaaaaatttaaagcattttgttcttgatgaatgcgacaaaatgctt
gaacagctagatatgcgcaaagatgttcaagaaatcttcagaagtacaccccatggcaaa
caagttatgatgttcagcgctacattgtcaaaggaaattcgcccagtctgcaaaaaattc
atgcaagatcccatggaagtttatgtcgatgatgaagcaaaacttacacttcacggtctt
caacaacattatgtcaaattgaaagaaaatgaaaaaaataagaaactttttgagttactt
gatgtcttagaattcaaccaagttgtcatatttgtcaagtccgttcaaagatgtatggca
ttggcgcaactgttgactgagcaaaatttcccagctattgggattcacagaggaatgact
caagaagaaagattaacaagatatcaatcattcaaagatttccaaaagagaatattagta
gcaacaaatctttttggacgaggaatggatattgaaagagtcaatatagtttttaattat
gatatgcctgaaaattctgacacatatttgcatcgtgtagctagagccggtcgattcgga
actaagggtttggctattacgtttgtcagcgacgaaggcgacgcaaaaatattaaatgac
gtacaagaaagatttgacgttaacatcaccgaactaccagatgaaatcgatcttgcatca
tacattgaaggacgataa
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