KEGG   Thermococcus profundus: A3L09_02300
Entry
A3L09_02300       CDS       T05153                                 
Name
(GenBank) RNA-binding protein
  KO
K03679  exosome complex component RRP4
Organism
tprf  Thermococcus profundus
Pathway
tprf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tprf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    A3L09_02300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tprf03019]
    A3L09_02300
Messenger RNA biogenesis [BR:tprf03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     A3L09_02300
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     A3L09_02300
SSDB
Motif
Pfam: ECR1_N_2 RRP4_S1 KH_6 KH_1 ECR1_N KH_2 RRP40_S1 KH_KhpA-B
Other DBs
NCBI-ProteinID: ASJ02179
UniProt: A0A2Z2M9V5
LinkDB
Position
424682..425446
AA seq 254 aa
MRRVFVKPRELVVPGTLLAQGPFKSGRGTFREGNRIYSTVVGLVEVRGDLIRVIPLEGPY
MPEVGDNVLGKIIDVKFSAWSVDIGAPYQASLRVQDAVEERIDLMKTDLRKIFDIGDIIY
ARIKAYNEVNQIDLTTKGMPFRGGPLRGGRLVTITPSKVPRVIGKGGSMINTIKKLTRTR
IIVGQNGWVWVSGKNEELENLAVEAILKVNRESHTQGLTDRVKEFLLSRLQDLKERGVID
EIPQLDEDNEGEGQ
NT seq 765 nt   +upstreamnt  +downstreamnt
atgaggagagtttttgtaaaaccccgggagttagtggttccagggacgctactggcgcag
ggccccttcaaaagcggaaggggaacatttagagaaggcaacaggatctactcaacggta
gttggtctcgttgaggtcaggggagatctcataagggtaataccccttgagggtccctac
atgcctgaagttggggacaacgttctgggcaagataatcgacgttaagttctcggcttgg
tcagtggacataggagccccctaccaggccagcctccgtgttcaagatgcggttgaggaa
aggatcgatctcatgaagaccgatttgaggaagatctttgacataggggacataatctac
gcccggattaaggcttacaacgaagtgaaccagatagacctgaccacaaaaggaatgccg
ttcaggggaggtcccctcagaggagggaggctcgtcaccataacgccctcaaaggttccg
agggttataggaaagggcggctcaatgataaacacgataaagaagctcactagaacgcgc
ataatagtcggtcagaacggctgggtctgggtcagcggaaagaacgaggaactggagaac
ctcgccgttgaggccatactcaaggtgaacagggaaagccacacgcagggcctcaccgac
agggttaaggagttcctcctttctagactccaggacctcaaagagcggggagtgatcgat
gagattccccagctggatgaggataacgaaggtgaaggacaatga

DBGET integrated database retrieval system