Thermococcus profundus: A3L09_02300
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Entry
A3L09_02300 CDS
T05153
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
tprf
Thermococcus profundus
Pathway
tprf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tprf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3L09_02300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tprf03019
]
A3L09_02300
Messenger RNA biogenesis [BR:
tprf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
A3L09_02300
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
A3L09_02300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
RRP4_S1
KH_6
KH_1
ECR1_N
KH_2
RRP40_S1
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ASJ02179
UniProt:
A0A2Z2M9V5
LinkDB
All DBs
Position
424682..425446
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AA seq
254 aa
AA seq
DB search
MRRVFVKPRELVVPGTLLAQGPFKSGRGTFREGNRIYSTVVGLVEVRGDLIRVIPLEGPY
MPEVGDNVLGKIIDVKFSAWSVDIGAPYQASLRVQDAVEERIDLMKTDLRKIFDIGDIIY
ARIKAYNEVNQIDLTTKGMPFRGGPLRGGRLVTITPSKVPRVIGKGGSMINTIKKLTRTR
IIVGQNGWVWVSGKNEELENLAVEAILKVNRESHTQGLTDRVKEFLLSRLQDLKERGVID
EIPQLDEDNEGEGQ
NT seq
765 nt
NT seq
+upstream
nt +downstream
nt
atgaggagagtttttgtaaaaccccgggagttagtggttccagggacgctactggcgcag
ggccccttcaaaagcggaaggggaacatttagagaaggcaacaggatctactcaacggta
gttggtctcgttgaggtcaggggagatctcataagggtaataccccttgagggtccctac
atgcctgaagttggggacaacgttctgggcaagataatcgacgttaagttctcggcttgg
tcagtggacataggagccccctaccaggccagcctccgtgttcaagatgcggttgaggaa
aggatcgatctcatgaagaccgatttgaggaagatctttgacataggggacataatctac
gcccggattaaggcttacaacgaagtgaaccagatagacctgaccacaaaaggaatgccg
ttcaggggaggtcccctcagaggagggaggctcgtcaccataacgccctcaaaggttccg
agggttataggaaagggcggctcaatgataaacacgataaagaagctcactagaacgcgc
ataatagtcggtcagaacggctgggtctgggtcagcggaaagaacgaggaactggagaac
ctcgccgttgaggccatactcaaggtgaacagggaaagccacacgcagggcctcaccgac
agggttaaggagttcctcctttctagactccaggacctcaaagagcggggagtgatcgat
gagattccccagctggatgaggataacgaaggtgaaggacaatga
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integrated database retrieval system