Thermococcus profundus: A3L09_03045
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Entry
A3L09_03045 CDS
T05153
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tprf
Thermococcus profundus
Pathway
tprf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tprf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3L09_03045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tprf03019
]
A3L09_03045
03009 Ribosome biogenesis [BR:
tprf03009
]
A3L09_03045
Enzymes [BR:
tprf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3L09_03045
Messenger RNA biogenesis [BR:
tprf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3L09_03045
Ribosome biogenesis [BR:
tprf03009
]
Prokaryotic type
rRNA helicases
A3L09_03045
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
ASJ02305
UniProt:
A0A2Z2MCK5
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All DBs
Position
complement(544502..545686)
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AA seq
394 aa
AA seq
DB search
MSFEKLGLSEATLVAVRQKGFERPTDIQREVIPLLLSGEKDIIGQSQTGTGKTAAFALPI
IEAIDPKEKNVQAIILTPTRELALQVADEIKSLRGRKRVYVYAVYGGQPIGPQIRALERG
THVVVGTPGRVLDHIRRGTIDLSGVKFFILDEADRMLDMGFIDDIESIMRNTPEEKRILM
FSATMPREILLLAKRYMRNPEVVIVSRDELVPEMVDQEYVEVLPARRYRKLREVLTEDFY
GIIFCQTKRETRELSERLRRDGYSAEALNGDMNQAARERTFKRFKERRTRILVATDVAAR
GLDVRDISHVVNYSIPMNPEQYIHRIGRTGRMGKRGRAITFLQPGELRKFRYIAKDAGVE
VRRSSLSEKTPKEFRNEELESEYRRRWGGRRRRF
NT seq
1185 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaaaagttaggtttatccgaggccaccctagtggccgtcaggcaaaagggt
tttgaaagaccaacggacattcagagggaggtcatacccctgcttctctcgggcgagaag
gatataatcggccagtcccagaccgggaccgggaagacagctgcttttgcgcttccgata
atagaggcgatagaccccaaggagaaaaacgttcaggcgataatcctcacgcccaccagg
gagctcgccctccaagtggcggatgaaatcaaaagcctccgcgggaggaagagggtctac
gtttacgctgtctacggcggccagccgatagggccccagataagggcgcttgagagggga
acgcacgtcgtcgtcggaactccaggaagggttctcgaccacataaggcgcggcaccatc
gacctgagcggggtcaagttcttcatcctcgacgaggccgacaggatgctcgacatgggg
ttcatcgatgacatagagagcataatgaggaacacccccgaggaaaagcgcatcctgatg
ttctcagctactatgccgagggagatcctcctcctggcgaagaggtacatgaggaacccc
gaggtcgtgatagtcagcagagacgagcttgttccagagatggtcgaccaagagtacgtg
gaagtccttccggcgaggaggtacagaaagctcagggaagttctcaccgaggatttctac
ggcataatcttctgccagaccaaaagggaaacccgtgagctgagcgagaggctcaggaga
gacggctacagtgcagaagctctcaacggggacatgaaccaggcagcccgcgaaagaacc
ttcaagaggttcaaagaaaggaggaccaggatactcgtcgcgacggacgtcgcggccagg
ggtctggacgttcgggacataagccacgtcgtaaactactccatcccaatgaacccggag
cagtacatccaccgcattgggagaacgggaagaatgggtaagaggggaagagccataaca
ttcctccagccgggcgagctcaggaagttcaggtacatagccaaggacgctggggtggag
gtgaggaggtcatccctcagcgagaaaacccccaaagagttcagaaacgaggaactggag
agcgagtaccgaagaaggtggggaggaaggaggagaaggttttag
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