KEGG   Thermococcus profundus: A3L09_04330
Entry
A3L09_04330       CDS       T05153                                 
Name
(GenBank) DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tprf  Thermococcus profundus
Pathway
tprf03030  DNA replication
tprf03410  Base excision repair
tprf03420  Nucleotide excision repair
tprf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tprf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A3L09_04330
   03410 Base excision repair
    A3L09_04330
   03420 Nucleotide excision repair
    A3L09_04330
   03430 Mismatch repair
    A3L09_04330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tprf03032]
    A3L09_04330
   03400 DNA repair and recombination proteins [BR:tprf03400]
    A3L09_04330
Enzymes [BR:tprf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     A3L09_04330
    6.5.1.6  DNA ligase (ATP or NAD+)
     A3L09_04330
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     A3L09_04330
DNA replication proteins [BR:tprf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    A3L09_04330
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     A3L09_04330
DNA repair and recombination proteins [BR:tprf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     A3L09_04330
   NER (nucleotide excision repair)
    Other NER factors
     A3L09_04330
   MMR (mismatch excision repair)
    Other MMR factors
     A3L09_04330
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DNA_ligase_OB_2 DHQS
Other DBs
NCBI-ProteinID: ASJ03720
UniProt: A0A2Z2MAT4
LinkDB
Position
complement(767939..769618)
AA seq 559 aa
MKYSELADLYRRLEKTTLKTLKTKFVADFLKRTPDELLDVVPYLILGKVFPDWDERELGV
GEKLLIKAVSMATGVSESEIENSIKDTGDLGESIALAVKKKKQKSFFSQPLTIKRVYDTF
IKIAEASGEGSQDRKMKYLANLFMDAEGEEAKYLARTVLGTMRTGVAEGILRDAIASAFN
VKPELVERAYMLTSDFGHVAKIAKLEGNDGLSKVRIQVGKPIRPMLAQNAADVKEALLEM
GGKAAFEIKYDGARVQVHKDGKSVVIYSRRLENVTRAIPDVVSAVLESIKAERAIVEGEL
VAVGEGGRPRPFQYVLRRFRRKYNIEEMIEKIPLELNLFDVMFIDGESLIETPFEERRRR
LENLIEESEKIKLAVQLVTNSVEEAQKFYEKALELGHEGVMAKRLDSIYEPGNRGKKWLK
VKPTMEDLDLVIIGAEWGEGRRAHLLGSFLVAAFDPHSGEFVPVGKVGSGFTDEDLAEFT
KMLKPLIVREEGKYVELEPKVVIEVTYQEIQKSPKYGSGFALRFPRYVALREDKSPEEAD
TIERVAQLYELQERFKAKR
NT seq 1680 nt   +upstreamnt  +downstreamnt
atgaagtactccgagctcgccgacctctacaggaggcttgaaaagaccacgctgaaaacc
ctcaagacaaagttcgtcgcagattttctgaagagaacgccggacgagcttctcgatgtg
gttccctacctcatcctgggcaaggtcttcccggactgggatgagagggagctgggtgtt
ggggagaagcttctgataaaggcagtttccatggcaacgggagtttcggagagcgaaata
gagaactcaatcaaagacacgggggatctgggtgagagcatagccctggcagtcaaaaag
aaaaagcagaagagtttcttttcccagcccctcactataaaacgcgtttacgacaccttc
atcaagatcgcagaggcgagcggggaggggagccaggacagaaagatgaagtacctggcg
aacctgttcatggacgcggagggcgaggaagctaaatacctggcgaggaccgttctcgga
accatgagaaccggggttgccgaggggatacttagagacgccatagcgagcgccttcaac
gtcaaaccagagctcgttgagagggcgtacatgctcacgagcgactttggccacgtggca
aagatagccaaacttgagggcaacgatggactgtccaaggtgaggattcaggtagggaag
cctataagaccgatgctggcccagaacgccgcggacgtcaaggaagccctccttgagatg
ggtggaaaggccgccttcgagataaagtacgacggggccagggttcaggtgcacaaggac
ggaaagagcgtcgtcatctactcccgcaggctggagaacgtcacgagggcaatccctgat
gttgtctcagcagtcctggagagcatcaaagccgaaagggcgatagtggaaggcgaactt
gtagcggtcggcgaaggcggaagaccaaggcccttccagtacgtcctcaggcgcttcagg
agaaagtacaacatcgaggagatgattgagaagatccccctggagctcaaccttttcgac
gtgatgttcatcgacggggagagcctcatagagaccccgtttgaggaaaggcggagaaga
cttgagaacctcatcgaggagagcgagaagataaagctcgccgtacagctggtgacgaac
agcgttgaggaagctcagaaattctacgagaaggcattggagctcggacatgagggggtt
atggcaaaaagactggattcgatctacgagccaggcaacaggggcaagaagtggctcaag
gtgaagcccacgatggaggatctagatctggtcattataggcgccgagtggggagaggga
aggagggcgcacctcctcggctctttcctcgtcgcggccttcgatccccacagcggcgag
ttcgtcccggttgggaaggtcggcagcggcttcaccgatgaggatctggccgagttcaca
aagatgctcaagccgctgatagtcagggaggagggaaaatacgtcgaactggagcccaag
gtggttatagaggtcacctaccaggagatacagaagagtccaaagtacgggagcggtttt
gcccttcgtttcccgcgctacgtggccctgagggaagacaagagtcctgaagaggccgac
acgatagagagagttgcacagctctacgaactccaggaaaggttcaaagcgaagaggtga

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